BAC Information

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BAC

Clone NameB6Ng01-344J02
Chromosome17 (Build37)
Map Location 9,520,894 - 9,623,026
singlet/doubletdoublet
Overlap geneEG667170
Upstream gene9630019K15Rik, EG435502, LOC433063, T2, T, LOC100040817, Pde10a, 1700010I14Rik, EG667165, LOC666143
Downstream gene4932702K14Rik, Qk, LOC675815, Pacrg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344J02.bB6Ng01-344J02.g
ACCGA127020GA127021
length1,174556
definitionB6Ng01-344J02.b B6Ng01-344J02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,621,823 - 9,623,026)(9,520,894 - 9,521,455)
sequence
gaattcacccaagaaaataaatgtttgactataaaggacaggaagaagtt
gtccttaggttttcacatatgccttgttgtattagagttgatactagttg
cccacaagttcacctagctgcccacgatgtcacagctatttaaattcgaa
tttaaatcctaaggaaagtattgtgtctttggcaaaaacattcatgtaaa
atttagtgatccttccatagtgaattgtggcacagtggagattctacatg
cctgctggcatcacaaatatctcttatagaacatgcatgtctactgcaga
tgctgctgtccccagagagatgaaatgagtgtccatacttgtttctctgg
tttataaactatgacaattttttggcctgctttcaatactctggaaaaaa
aaatgaaaacagtagcctcattttaggatgttgtggcatgtgaaagcttc
tctgtcatgttctacatgtcagtgtttcatgtgtgcagtgaactgagact
cagctgggtccagagaacagggtgagttaagtcaacaaggctgattcaag
tgagaaccatttcacaggactgaaatggctaacatctttcctcgtaagac
agagcatagtccttcatgtgtgttacatgattggctagcatgcaatgaca
gagtcagtaggtagaacatttatctttttgaataacttgagtggccatgt
ctccaccagcagtccctaccttctgtgtctggtctgataattccccagaa
agatgggccttccaggcatggcccaggtgaggcttaggacgtaccccgca
gtaactagatcattacagaaggccctgcagacggaggtaacaagtcagtg
atgacaggccatgcatcatgcattcactgtccatgaaggactcttttttt
tttttttccatgagactgatttatcacaagagaaggaacctcctgggtga
tggagtttataccatgatttgcacagctcccgcagatagaagatcttgtc
acaaagtcagagcaaaggagatatctgacaaagacagttggaaactatgc
ttctctcttcttctgctgggatgcagaagcatttgctagagctctgccat
aatccaaatacgcatgtctgttaatccaattttaaccgcagtctagaaga
cagctgactcagaagaaggaaggt
ccatgctagagtagtgaactttaaatatttatatgaaatataaaagttat
tttattacatatacacttatacatctgttttctgatccataaaaatagct
agaatgttatatgttaagaatggagagttacattaatctctagagagtaa
agacattgggaaagacttaaaggttcttgtataacgccttgtccataaac
aaaactcacttattcatccgtgagtctttgggcaggggaagctcggaggg
taagtttacgcaggagtgtcactttctcgtggtttctgaaacatacaaga
gagaagaggcagatccaagttcctgtgtagtatgaagatgcagagtgtgg
acaccatccttgaagagagccctctccctctgaccgcaggcatatctagt
atataacaggaaatcccacggctgcacatcaaccagaaaacacaaagcgc
ctgagcagcaagagtgtgcatgtgtgtgtgtgcatgtgtgtgcatgtgtg
tatgtgtgtgtgcatgtgtgtgtgtacatgtgtgtgtgtgtacatgtgtg
tgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_9621823_9623026
seq2: B6Ng01-344J02.b_43_1216 (reverse)

seq1  ACCTTCCTTCTCTTCCCTGAGTCCAGCCCTGCTTCTCTTTAAGGACTTGG  50
      |||||||||||     |||||| ||||  | |||||       ||||  |
seq2  ACCTTCCTTCT----TCTGAGT-CAGCTGT-CTTCT------AGACT--G  36

seq1  CTGTTAAAAATTGAAATTACCAGACATGCTGTATTTTGAATTTATGCCAG  100
      | ||||||| | |  |||| ||||||||| |||||| ||  ||||| |||
seq2  CGGTTAAAATTGG--ATTAACAGACATGC-GTATTTGGA--TTATGGCAG  81

seq1  AGCTCCTTAGGCAAATGCTTTCTGCATTCCCAAGC--AAGAAGAGAGAGA  148
      |||||  || |||||||| ||||||||  || |||  ||||||||||| |
seq2  AGCTC--TA-GCAAATGC-TTCTGCAT--CCCAGCAGAAGAAGAGAGA-A  124

seq1  GCATAGTTTTCCCAACTGTCTTTGTCAGATATTCTCCTTTGCTCCTGACT  198
      |||||||||  |||||||||||||||||||| ||||||||||| ||||| 
seq2  GCATAGTTT--CCAACTGTCTTTGTCAGATA-TCTCCTTTGCT-CTGAC-  169

seq1  TTTGTGACAAGATCCTTCTATCTGCGGGAGCTGTGCAAAATCATGGTATA  248
      ||||||||||||| |||||||||||||||||||||| |||||||||||||
seq2  TTTGTGACAAGAT-CTTCTATCTGCGGGAGCTGTGC-AAATCATGGTATA  217

seq1  AACTCCATCACCCAGGAGGTTCCTTCTCTTGTGATAAATCAGTCTCATGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCATCACCCAGGAGGTTCCTTCTCTTGTGATAAATCAGTCTCATGG  267

seq1  -AAAAAAAAAAAAAGAGTCCTTCATGGACAGTGAATGCATGATGCATGGC  347
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAGAGTCCTTCATGGACAGTGAATGCATGATGCATGGC  317

seq1  CTGTCATCACTGACTTGTTACCTCCGTCTGCAGGGCCTTCTGTAATGATC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATCACTGACTTGTTACCTCCGTCTGCAGGGCCTTCTGTAATGATC  367

seq1  TAGTTACTGCGGGGTACGTCCTAAGCCTCACCTGGGCCATGCCTGGAAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTACTGCGGGGTACGTCCTAAGCCTCACCTGGGCCATGCCTGGAAGG  417

seq1  CCCATCTTTCTGGGGAATTATCAGACCAGACACAGAAGGTAGGGACTGCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTTTCTGGGGAATTATCAGACCAGACACAGAAGGTAGGGACTGCT  467

seq1  GGTGGAGACATGGCCACTCAAGTTATTCAAAAAGATAAATGTTCTACCTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGACATGGCCACTCAAGTTATTCAAAAAGATAAATGTTCTACCTA  517

seq1  CTGACTCTGTCATTGCATGCTAGCCAATCATGTAACACACATGAAGGACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCTGTCATTGCATGCTAGCCAATCATGTAACACACATGAAGGACT  567

seq1  ATGCTCTGTCTTACGAGGAAAGATGTTAGCCATTTCAGTCCTGTGAAATG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTGTCTTACGAGGAAAGATGTTAGCCATTTCAGTCCTGTGAAATG  617

seq1  GTTCTCACTTGAATCAGCCTTGTTGACTTAACTCACCCTGTTCTCTGGAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCACTTGAATCAGCCTTGTTGACTTAACTCACCCTGTTCTCTGGAC  667

seq1  CCAGCTGAGTCTCAGTTCACTGCACACATGAAACACTGACATGTAGAACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGAGTCTCAGTTCACTGCACACATGAAACACTGACATGTAGAACA  717

seq1  TGACAGAGAAGCTTTCACATGCCACAACATCCTAAAATGAGGCTACTGTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAGAAGCTTTCACATGCCACAACATCCTAAAATGAGGCTACTGTT  767

seq1  TTCATTTTTTTTTCCAGAGTATTGAAAGCAGGCCAAAAAATTGTCATAGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTTTTTTCCAGAGTATTGAAAGCAGGCCAAAAAATTGTCATAGT  817

seq1  TTATAAACCAGAGAAACAAGTATGGACACTCATTTCATCTCTCTGGGGAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAACCAGAGAAACAAGTATGGACACTCATTTCATCTCTCTGGGGAC  867

seq1  AGCAGCATCTGCAGTAGACATGCATGTTCTATAAGAGATATTTGTGATGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCATCTGCAGTAGACATGCATGTTCTATAAGAGATATTTGTGATGC  917

seq1  CAGCAGGCATGTAGAATCTCCACTGTGCCACAATTCACTATGGAAGGATC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGCATGTAGAATCTCCACTGTGCCACAATTCACTATGGAAGGATC  967

seq1  ACTAAATTTTACATGAATGTTTTTGCCAAAGACACAATACTTTCCTTAGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATTTTACATGAATGTTTTTGCCAAAGACACAATACTTTCCTTAGG  1017

seq1  ATTTAAATTCGAATTTAAATAGCTGTGACATCGTGGGCAGCTAGGTGAAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATTCGAATTTAAATAGCTGTGACATCGTGGGCAGCTAGGTGAAC  1067

seq1  TTGTGGGCAACTAGTATCAACTCTAATACAACAAGGCATATGTGAAAACC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGCAACTAGTATCAACTCTAATACAACAAGGCATATGTGAAAACC  1117

seq1  TAAGGACAACTTCTTCCTGTCCTTTATAGTCAAACATTTATTTTCTTGGG  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGACAACTTCTTCCTGTCCTTTATAGTCAAACATTTATTTTCTTGGG  1167

seq1  TGAATTC  1204
      |||||||
seq2  TGAATTC  1174

seq1: chr17_9520894_9521455
seq2: B6Ng01-344J02.g_64_625

seq1  GAATTCCCATGCTAGAGTAGTGAACTTTAAATATTTATATGAAATATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATGCTAGAGTAGTGAACTTTAAATATTTATATGAAATATAAA  50

seq1  AGTTATTTTATTACATATACACTTATACATCTGTTTTCTGATCCATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTTTATTACATATACACTTATACATCTGTTTTCTGATCCATAAAA  100

seq1  ATAGCTAGAATGTTATATGTTAAGAATGGAGAGTTACATTAATCTCTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTAGAATGTTATATGTTAAGAATGGAGAGTTACATTAATCTCTAGA  150

seq1  GAGTAAAGACATTGGGAAAGACTTAAAGGTTCTTGTATAACGCCTTGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAAGACATTGGGAAAGACTTAAAGGTTCTTGTATAACGCCTTGTCC  200

seq1  ATAAACAAAACTCACTTATTCATCCGTGAGTCTTTGGGCAGGGGAAGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAAACTCACTTATTCATCCGTGAGTCTTTGGGCAGGGGAAGCTC  250

seq1  GGAGGGTAAGTTTACGCAGGAGTGTCACTTTCTCGTGGTTTCTGAAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTAAGTTTACGCAGGAGTGTCACTTTCTCGTGGTTTCTGAAACAT  300

seq1  ACAAGAGAGAAGAGGCAGATCCAAGTTCCTGTGTAGTATGAAGATGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGAGAAGAGGCAGATCCAAGTTCCTGTGTAGTATGAAGATGCAGA  350

seq1  GTGTGGACACCATCCTTGAAGAGAGCCCTCTCCCTCTGACCGCAGGCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGACACCATCCTTGAAGAGAGCCCTCTCCCTCTGACCGCAGGCATA  400

seq1  TCTAGTATATAACAGGAAATCCCACGGCTGCACATCAACCAGAAAACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTATATAACAGGAAATCCCACGGCTGCACATCAACCAGAAAACACA  450

seq1  AAGCGCCTGAGCAGCAAGAGTGTGCATGTGTGTGTGTGCATGTGTGTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGCCTGAGCAGCAAGAGTGTGCATGTGTGTGTGTGCATGTGTGTGCA  500

seq1  TGTGTGTATGTGTGTGTGCATGTGTGTGTGTACATGTGTGTGTGTGTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATGTGTGTGTGCATGTGTGTGTGTACATGTGTGTGTGTGTACA  550

seq1  TGTGTGTGTGTG  562
      ||||||||||||
seq2  TGTGTGTGTGTG  562