BAC Information

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BAC

Clone NameB6Ng01-346I13
Chromosome17 (Build37)
Map Location 40,733,297 - 40,734,534
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668200, LOC672857, LOC627695, LOC634967, Pgk2, Crisp3, Crisp1, LOC668229, LOC100043756, EG433107
Downstream geneEG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut, Ldha-ps3, LOC627577
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346I13.bB6Ng01-346I13.g
ACCGA128404GA128405
length1,242737
definitionB6Ng01-346I13.b B6Ng01-346I13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatgacccctgctgctgctggctatcaatgactaaggaagcatc
tgctgcagtagtatcaatgactccagcctcataattgagaaggagaaaca
ttgaaggcttttgcaacaacctcttcctctctccccaagggggggaaaaa
aaacaatcatgatgggaagctgttgaaaccatagtctgtgtgacaccagg
aaagaattataataagataaggacaataaacggcagtagatgaatatagg
ctcattgattacaccaattttagaattaggtgatggatattgatgaagaa
atagaagcacatatcagtgagcaaaagcatatgaggatgattgtaatata
aattttcacatgcacctaaactttagtaataaaatatattaaattacaac
attaagaaaagagagggggaagtgctgagatagacacagaaaggttttaa
tctgattcctatacacatgcaatgggacctgggcatggcactcacacata
gaaacaagtacacacacacacacacacacacacacacacacacacacaca
cacacacattaagagaggtagagagtgagagagcaagagaaccctttaga
aattattattttgtacaaatatttgaaaatataacaaattaaagccaaat
gaaaatgtccatcatataaaatgtgtcacaaaggaatatatattaatgtc
aaatttttaaaagtcctttgaactttccatgagatcctgctcttatcctg
tgtcattgttccatgaccactatgagacaatacttttgctgtgcaatatg
gccccaaaattattttatgccacattattttgtgtagttatacatttagt
acacgtttatataagactaaatggtttgaaatgtctggatttatacatcc
tttacaccttgtcaggttttcaaattcattattctaaactgctctatcag
tacttttgaactgtctaatttacaccatgatacttcaatgcagttgcact
agttgattatatgtctgtttctacagtatgctaattgcttttaaaatagc
ttgaagccatgtagagaacagttataagaaagctacatcaaagtaacctt
ctacaaattttccttttcccttattcaagtacatcagaagaacagaagtt
ggtatgggttctagtttagctaagaaaatcagttcaatggtcccagtgcc
atttctttaatttaagtgagggtgtgtgcattctgtgaaaac

gaattctattccgttgtttgacctgcctgtcactgtaccagtaccatgca
gcttttatcactatttctatgcattacagtttgaggtctgggatgctgat
tccctcagaagtttttttcttgttaagaatacttttcgctgtcctggggt
ttttgttttccagatgaatttgagaattactcttcccttctttctttttg
tttttctttttcttcccttccctttcctttcctttcccttcccttccctt
cccttcccttcccttcccttcccttccctttcctttctcttttctttctt
ttcttttctttttcttatcctttttttactgttcattttttttcgaagag
aattgattgaaaatgtagattgctttcagcaagatggtcatttttactat
attaatcctgccaatccatgagcataggagatctttccatcttctgaggc
cttatttgatttcttaattcagagacttgaagttcttgtaatacagatct
ttcacttgttttattagtcacaccaagatactttattttgtttgtgacta
ttatgaatggtatcaattctctaatttctttgtcagccagtttgtccttt
gagaataagaaggttagtgaattgttgagtgaattttatatctggccact
ttgctgaaagttgtttatcagctgtaggagttatatggtggagttttggg
ggtcacttaaagtatactataatatcatctgcaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_40733297_40734534
seq2: B6Ng01-346I13.b_46_1287

seq1  GAATTCCATGACCCCTGCTGCTGCTGGCTATCAATGACTAAGGAAGCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGACCCCTGCTGCTGCTGGCTATCAATGACTAAGGAAGCATC  50

seq1  TGCTGCAGTAGTATCAATGACTCCAGCCTCATAATTGAGAAGGAGAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCAGTAGTATCAATGACTCCAGCCTCATAATTGAGAAGGAGAAACA  100

seq1  TTGAAGGCTTTTGCAACAACCTCTTCCTCTCTCCCCAAGGGGGGGAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGCTTTTGCAACAACCTCTTCCTCTCTCCCCAAGGGGGGGAAAAA  150

seq1  AAACAATCATGATGGGAAGCTGTTGAAACCATAGTCTGTGTGACACCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATCATGATGGGAAGCTGTTGAAACCATAGTCTGTGTGACACCAGG  200

seq1  AAAGAATTATAATAAGATAAGGACAATAAACGGCAGTAGATGAATATAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATTATAATAAGATAAGGACAATAAACGGCAGTAGATGAATATAGG  250

seq1  CTCATTGATTACACCAATTTTAGAATTAGGTGATGGATATTGATGAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGATTACACCAATTTTAGAATTAGGTGATGGATATTGATGAAGAA  300

seq1  ATAGAAGCACATATCAGTGAGCAAAAGCATATGAGGATGATTGTAATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGCACATATCAGTGAGCAAAAGCATATGAGGATGATTGTAATATA  350

seq1  AATTTTCACATGCACCTAAACTTTAGTAATAAAATATATTAAATTACAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCACATGCACCTAAACTTTAGTAATAAAATATATTAAATTACAAC  400

seq1  ATTAAGAAAAGAGAGGGGGAAGTGCTGAGATAGACACAGAAAGGTTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAAAAGAGAGGGGGAAGTGCTGAGATAGACACAGAAAGGTTTTAA  450

seq1  TCTGATTCCTATACACATGCAATGGGACCTGGGCATGGCACTCACACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTCCTATACACATGCAATGGGACCTGGGCATGGCACTCACACATA  500

seq1  GAAACAAGTACACACACACACACACACACACACACACACACACACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAGTACACACACACACACACACACACACACACACACACACACACA  550

seq1  CACACACATTAAGAGAGGTAGAGAGTGAGAGAGCAAGAGAACCCTTTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACATTAAGAGAGGTAGAGAGTGAGAGAGCAAGAGAACCCTTTAGA  600

seq1  AATTATTATTTTGTACAAATATTTGAAAATATAACAAATTAAAGCCAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTATTTTGTACAAATATTTGAAAATATAACAAATTAAAGCCAAAT  650

seq1  GAAAATGTCCATCATATAAAATGTGTCACAAAGGAATATATATTAATGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTCCATCATATAAAATGTGTCACAAAGGAATATATATTAATGTC  700

seq1  AAATTTTTAAAAGTCCTTTGAACTTTCCATGAGATCCTGCTCTTATCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTAAAAGTCCTTTGAACTTTCCATGAGATCCTGCTCTTATCCTG  750

seq1  TGTCATTGTTCCATGACCACTATGAGACAATACTTTTGCTGTGCAATATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTGTTCCATGACCACTATGAGACAATACTTTTGCTGTGCAATATG  800

seq1  GCCCCAAAATTATTTTATGCCACATTATTTTGTGTAGTTATACATTTAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAAAATTATTTTATGCCACATTATTTTGTGTAGTTATACATTTAGT  850

seq1  ACACGTTTATATAAGACTAAATGGTTTGAAATGTCTGGATTTATACATCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTTTATATAAGACTAAATGGTTTGAAATGTCTGGATTTATACATCC  900

seq1  TTTACACCTTGTCAGGTTTTCAAATTCATTATTCTAAACTGCTCTATCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACCTTGTCAGGTTTTCAAATTCATTATTCTAAACTGCTCTATCAG  950

seq1  TACTTTTGAACTGTCTAATTTACACCATGATACTTCAATGCAGTTGCACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTGAACTGTCTAATTTACACCATGATACTTCAATGCAGTTGCACT  1000

seq1  AGTTGATTATATGTCTGTTTCTACAGTATGCTAATTGCTTTTAAAAATAG  1050
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGTTGATTATATGTCTGTTTCTACAGTATGCTAATTGCTTTT-AAAATAG  1049

seq1  CTTGAAGCCATGTAGGAGACAG-TAT-AGAAAGCTACATCAAAGTAACCT  1098
      |||||||||||||||   |||| ||| |||||||||||||||||||||||
seq2  CTTGAAGCCATGTAGAGAACAGTTATAAGAAAGCTACATCAAAGTAACCT  1099

seq1  TCTACAAA-TTTCCTTTCCCTTTAATCCAAGTACATCAGA--GACAG-AG  1144
      |||||||| |||||||| || || || |||||||||||||   |||| ||
seq2  TCTACAAATTTTCCTTTTCCCTT-ATTCAAGTACATCAGAAGAACAGAAG  1148

seq1  TTGGTATGGG-TCTAATTATAAGCTAAG-AAATCAGT--CATGTCCAAAG  1190
      |||||||||| |||| |  | ||||||| ||||||||   |||  |  ||
seq2  TTGGTATGGGTTCTAGT--TTAGCTAAGAAAATCAGTTCAATGGTCCCAG  1196

seq1  TGGCATTTTCTTTAAAATTTTAGTGAAGG-GTGTGGATTCTGTGAAAAC  1238
      || || |||||||  ||||| ||||| || ||||| |||||||||||||
seq2  TGCCA-TTTCTTT--AATTTAAGTGAGGGTGTGTGCATTCTGTGAAAAC  1242


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