BAC Information

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BAC

Clone NameB6Ng01-347C03
Chromosome17 (Build37)
Map Location 91,257,534 - 91,410,080
singlet/doubletdoublet
Overlap geneNrxn1
Upstream geneLOC100043906
Downstream geneEG668871, LOC668872, LOC627235, LOC100043741, LOC100043742
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347C03.bB6Ng01-347C03.g
ACCGA128829GA128830
length1,2051,102
definitionB6Ng01-347C03.b B6Ng01-347C03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,408,865 - 91,410,080)(91,257,534 - 91,258,658)
sequence
gaattccattttaagtatcttttttgctttttatcatttcaaatctaaaa
agccaaattgttagataggtgaaaagttgttgaagtctaactgtgctagg
gccttggagtccatctggtctgcatcccattctagtcagtaaattacaaa
gtttattaaaattgtgcaacagctttgattcaaattttcatcaaaataat
taaattttataaaaattggatttatgtttctaaatatacaagatataatt
taattaccctgaataaatggtgcctatacttcacaggtaaaagagctttg
tgattaaaaataattttgactcagttactatttaaatgtttttcttatag
tttggaagatttatttcccacagatacactcagattagtttagggtctat
gtgactaattgatgagttgctgaacatcggcaatatagagagaagatcac
aggactgggtatgagagagtctgactgatgtttatagaataatgaataaa
gcacatatttgtacccttggatcttagttgtttctttctccttgtgtgat
aattattatgtcagtttattaagtgagattacacaagattaaagtgtgcc
ttgagttagtgatgagtatcttctgcatcatcaactttaacaacagcctt
ccttaagcaataacgaccaaggcaaaaaagtgggtggatatatacccctt
tgatgcctcttgattctcttaatagcttgagtggaacagatactagaatc
ttacttgttcttctccctccaaaatatttaccgtcttcctgctgtgacaa
gttactatagttcctaatggtgtagtgaccttcagccacagatttattat
tgctactgcttcataactgtaatttgctaatgttatagattgtattgtaa
atacctgtagttttggatggtcttctgtgacccctgcgaaaggttcactt
gaattccaaagagcttgcaatcacaaggttgagactgctgatttaagagc
ataatttaggatgatgcatagcgataaaagtttgcttgaaaaactccccc
actaacccagagtccttttatagaagaataagaaagcatttaaaggtcat
ggtaattatttatgagcaaaataatgcatatggtgtctatgtatatccta
ctcaataacatgcatgtaggcacttttccactcaaatattattttcggac
tgcag

gaattcttttgcaagtagaaacagtgaaaatgctaagtacttcctacgaa
actacttgctaccagaaaacaaaacaaaacaacaacaaagtaacaataat
catagatttacctctaaatagaggtgggatgggccctcctgaggagatgt
gggcttctattacagtgaagtgctgagtaggtttctcagtgttcatgtcc
acagcaccagttgctccctggctttctttcttctcttttcttttttcttt
tcttttcttttcttttcttttcttttcttttcttttcttttcttttcttt
tcttttcttttcttttctttctttcgtttttttttgtttttgtttttgtt
tgtttgtttgtttttgttttttttgagatagggtttttctgtgtagccct
ggctgtcctggaactcaccttgtagaccaggctggcctctaactcagaaa
tctgcctgcctctgcctcctgagtgctaggattaaaggcatacgccacca
cggccctttgctccctggctttcaaaggatgtgtgtggacaagcctcatc
cagattgtctcaatgtggacatcccctcccattcagccctcagtgtgccc
atgtattgtcatggccattggagatgcatctaagcagtagctgaaaaaaa
aaaaaagagttcagcttctatccagaggttccgcgaaaaaaaaattctca
gcaatattctctgataaaacagccaaatgtaatctacagaacatatgaag
ttagagactatttgaagtaaagactttcattagtgaatactgattgtgta
aatctcagtggtagtggtgaacgcccttaatcccagcacttgggaggcag
agacaggcagaactctgtgagtttgaagccagtctggtctagagagcgag
atctaggacagagaaaccctatctttaaaaccagagaaagggtagaatat
aacttttgtgctacatgtaagtcctatgttattgctgttcagtgaatcat
agttctgggtccatgtgccaatccaatcaaagaatctagatcttaggagc
atattcttgtgtatgacttaccaagtacagtgtgttgtaaagcagatgct
gt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_91408865_91410080
seq2: B6Ng01-347C03.b_44_1248 (reverse)

seq1  CTGCAGTCTGAAAATATATATTTGAGTGGAAAAGTGCTTACATGCATGTA  50
      |||||||| ||||||| |||||||||||||||||||| ||||||||||| 
seq2  CTGCAGTCCGAAAATA-ATATTTGAGTGGAAAAGTGCCTACATGCATGTT  49

seq1  TATGAGTAGGAATATACATAGACA-CATATGCATATATTTGCTTCATATA  99
        |||||||| ||||||||||||| ||||||||| |||||   ||||| |
seq2  ATTGAGTAGG-ATATACATAGACACCATATGCAT-TATTTTGCTCATAAA  97

seq1  TATGTAACAATGACTTTTTAATTGCTGTCTTAATTTCTTCTATAAAAGGA  149
      ||  | || |||||  ||||| |||| |||||  ||||||||||||||| 
seq2  TA-ATTACCATGAC-CTTTAAATGCTTTCTTA--TTCTTCTATAAAAGG-  142

seq1  ACTCTGGGTTAGTGGTGAGTTTTTTTCAAGCAAACCTTTTTATCGCTATG  199
      ||||||||||||||| | |  ||||||||||||||  |||||||||||||
seq2  ACTCTGGGTTAGTGG-GGGAGTTTTTCAAGCAAAC--TTTTATCGCTATG  189

seq1  CATCATCCTAAATTATGCTCTTAAATCAGCAGTTCTCAACCTTGTGATTG  249
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CATCATCCTAAATTATGCTCTTAAATCAGCAG-TCTCAACCTTGTGATTG  238

seq1  CAAGCTCTTTGGAATTCAAGTGAACCTTTCGCAGGGGTCACAGAAGACCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCTTTGGAATTCAAGTGAACCTTTCGCAGGGGTCACAGAAGACCA  288

seq1  TCCAAAACTACAGGTATTTACAATACAATCTATAACATTAGCAAATTACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAACTACAGGTATTTACAATACAATCTATAACATTAGCAAATTACA  338

seq1  GTTATGAAGCAGTAGCAATAATAAATCTGTGGCTGAAGGTCACTACACCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGAAGCAGTAGCAATAATAAATCTGTGGCTGAAGGTCACTACACCA  388

seq1  TTAGGAACTATAGTAACTTGTCACAGCAGTAAGACGGTAAATATTTTGGA  449
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTAGGAACTATAGTAACTTGTCACAGCAGGAAGACGGTAAATATTTTGGA  438

seq1  GGGAGAAGAACAAGTAAGATTCTAGTATCTGTTCCACTCAAGCTATTAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAGAACAAGTAAGATTCTAGTATCTGTTCCACTCAAGCTATTAAG  488

seq1  AGAATCAAGAGGCATCAAAGGGGTATATATCCACCCACTTTTTTGCCTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCAAGAGGCATCAAAGGGGTATATATCCACCCACTTTTTTGCCTTG  538

seq1  GTCGTTATTGCTTAAGGAAGGCTGTTGTTAAAGTTGATGATGCAGAAGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTTATTGCTTAAGGAAGGCTGTTGTTAAAGTTGATGATGCAGAAGAT  588

seq1  ACTCATCACTAACTCAAGGCACACTTTAATCTTGTGTAATCTCACTTAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATCACTAACTCAAGGCACACTTTAATCTTGTGTAATCTCACTTAAT  638

seq1  AAACTGACATAATAATTATCACACAAGGAGAAAGAAACAACTAAGATCCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGACATAATAATTATCACACAAGGAGAAAGAAACAACTAAGATCCA  688

seq1  AGGGTACAAATATGTGCTTTATTCATTATTCTATAAACATCAGTCAGACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTACAAATATGTGCTTTATTCATTATTCTATAAACATCAGTCAGACT  738

seq1  CTCTCATACCCAGTCCTGTGATCTTCTCTCTATATTGCCGATGTTCAGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATACCCAGTCCTGTGATCTTCTCTCTATATTGCCGATGTTCAGCA  788

seq1  ACTCATCAATTAGTCACATAGACCCTAAACTAATCTGAGTGTATCTGTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATCAATTAGTCACATAGACCCTAAACTAATCTGAGTGTATCTGTGG  838

seq1  GAAATAAATCTTCCAAACTATAAGAAAAACATTTAAATAGTAACTGAGTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAATCTTCCAAACTATAAGAAAAACATTTAAATAGTAACTGAGTC  888

seq1  AAAATTATTTTTAATCACAAAGCTCTTTTACCTGTGAAGTATAGGCACCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATTTTTAATCACAAAGCTCTTTTACCTGTGAAGTATAGGCACCA  938

seq1  TTTATTCAGGGTAATTAAATTATATCTTGTATATTTAGAAACATAAATCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCAGGGTAATTAAATTATATCTTGTATATTTAGAAACATAAATCC  988

seq1  AATTTTTATAAAATTTAATTATTTTGATGAAAATTTGAATCAAAGCTGTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTATAAAATTTAATTATTTTGATGAAAATTTGAATCAAAGCTGTT  1038

seq1  GCACAATTTTAATAAACTTTGTAATTTACTGACTAGAATGGGATGCAGAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAATTTTAATAAACTTTGTAATTTACTGACTAGAATGGGATGCAGAC  1088

seq1  CAGATGGACTCCAAGGCCCTAGCACAGTTAGACTTCAACAACTTTTCACC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGACTCCAAGGCCCTAGCACAGTTAGACTTCAACAACTTTTCACC  1138

seq1  TATCTAACAATTTGGCTTTTTAGATTTGAAATGATAAAAAGCAAAAAAGA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAACAATTTGGCTTTTTAGATTTGAAATGATAAAAAGCAAAAAAGA  1188

seq1  TACTTAAAATGGAATTC  1216
      |||||||||||||||||
seq2  TACTTAAAATGGAATTC  1205


seq1: chr17_91257534_91258658
seq2: B6Ng01-347C03.g_69_1170

seq1  GAATTCTTTTGCAAGTAGAAACAGTGAAAATGCTAAGTACTTCCTACGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGCAAGTAGAAACAGTGAAAATGCTAAGTACTTCCTACGAA  50

seq1  ACTACTTGCTACCAGAAAACAAAACAAAACAACAACAAAGTAACAATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTGCTACCAGAAAACAAAACAAAACAACAACAAAGTAACAATAAT  100

seq1  CATAGATTTACCTCTAAATAGAGGTGGGATGGGCCCTCCTGAGGAGATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATTTACCTCTAAATAGAGGTGGGATGGGCCCTCCTGAGGAGATGT  150

seq1  GGGCTTCTATTACAGTGAAGTGCTGAGTAGGTTTCTCAGTGTTCATGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCTATTACAGTGAAGTGCTGAGTAGGTTTCTCAGTGTTCATGTCC  200

seq1  ACAGCACCAGTTGCTCCCTGGCTTTCTTTCTTCTCTTTTCTTTTTTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACCAGTTGCTCCCTGGCTTTCTTTCTTCTCTTTTCTTTTTTCTTT  250

seq1  TCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTT  300

seq1  TCTTTTCTTTTCTTTTCTTTCTTTCGTTTTTTTTTGTTTTTGTTTTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTTTCTTTTCTTTCTTTCGTTTTTTTTTGTTTTTGTTTTTGTT  350

seq1  TGTTTGTTTGTTTTTGTTTTTTTTGAGATAGGGTTTTTCTGTGTAGCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTTTGTTTTTTTTGAGATAGGGTTTTTCTGTGTAGCCCT  400

seq1  GGCTGTCCTGGAACTCACCTTGTAGACCAGGCTGGCCTCTAACTCAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCCTGGAACTCACCTTGTAGACCAGGCTGGCCTCTAACTCAGAAA  450

seq1  TCTGCCTGCCTCTGCCTCCTGAGTGCTAGGATTAAAGGCATACGCCACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTGCCTCTGCCTCCTGAGTGCTAGGATTAAAGGCATACGCCACCA  500

seq1  CGGCCCTTTGCTCCCTGGCTTTCAAAGGATGTGTGTGGACAAGCCTCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCCTTTGCTCCCTGGCTTTCAAAGGATGTGTGTGGACAAGCCTCATC  550

seq1  CAGATTGTCTCAATGTGGACATCCCCTCCCATTCAGCCCTCAGTGTGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTGTCTCAATGTGGACATCCCCTCCCATTCAGCCCTCAGTGTGCCC  600

seq1  ATGTATTGTCATGGCCATTGGAGATGCATCTAAGCAGTAGCTGAAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTGTCATGGCCATTGGAGATGCATCTAAGCAGTAGCTGAAAAAAA  650

seq1  AAAAAAGAGTTCAGCTTCTATCCAGAGGTTCCGCGAAAAAAAAATTCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAGTTCAGCTTCTATCCAGAGGTTCCGCGAAAAAAAAATTCTCA  700

seq1  GCAATATTCTCTGATAAAACAGCCAAATGTAATCTACAGAACATATGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATTCTCTGATAAAACAGCCAAATGTAATCTACAGAACATATGAAG  750

seq1  TTAGAGACTATTTGAAGTAAAGACTTTCATTAGTGAATACTGATTGTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGACTATTTGAAGTAAAGACTTTCATTAGTGAATACTGATTGTGTA  800

seq1  AATCTCAGTGGTAGTGGTGAACGCCCTTAATCCCAGCACTTGGGAGGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAGTGGTAGTGGTGAACGCCCTTAATCCCAGCACTTGGGAGGCAG  850

seq1  AGACAGGCAGAACTCTGTGAGTTTGAAGCCAGTCTGGTCTAGAGAGCGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGCAGAACTCTGTGAGTTTGAAGCCAGTCTGGTCTAGAGAGCGAG  900

seq1  ATCTAGGACAGAGAAACCCTATCTTTAAAAACCAGAAGAAAGGGTAGAAT  950
      |||||||||||||||||||||||||| |||||||| ||||||||||||| 
seq2  ATCTAGGACAGAGAAACCCTATCTTT-AAAACCAG-AGAAAGGGTAGAA-  947

seq1  TATAACTTTTGTGCTACATTGTAAGTCCTATGGTTATTTGCTTGTTTCAG  1000
      |||||||||||||||||| |||||||||||| |||| |||||   |||||
seq2  TATAACTTTTGTGCTACA-TGTAAGTCCTAT-GTTA-TTGCT--GTTCAG  992

seq1  TTGAAATCAATAGTTCTGGGTCCCATGTGCCAATCCAAATCAGAGAAATC  1050
      |   |||| |||||||||||| |||||||||||||| ||||| || ||||
seq2  T--GAATC-ATAGTTCTGGGT-CCATGTGCCAATCC-AATCAAAG-AATC  1036

seq1  CTTAGATCTTAGGAGCATACATTTCTGTGTTATGACTACACAAGGTTACA  1100
        ||||||||||||||||  |||  |||| |||||||   ||||  ||||
seq2  --TAGATCTTAGGAGCAT--ATTCTTGTG-TATGACTTACCAAG--TACA  1079

seq1  GTGTGTTGTAGAGGCAGATTGCTGT  1125
      |||||||||| | ||||| ||||||
seq2  GTGTGTTGTA-AAGCAGA-TGCTGT  1102


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