BAC Information

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BAC

Clone NameMSMg01-048I04
Chromosome17 (Build37)
Map Location 40,446,182 - 40,446,916
singlet/doubletsinglet
Overlap geneCrisp1
Upstream geneLOC100043300, EG668200, LOC672857, LOC627695, LOC634967, Pgk2, Crisp3
Downstream geneLOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut, Ldha-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048I04.T7 (MSMg01no048_i04.b1)MSMg01-048I04.TJ (MSMg01no048_i04.g1)
ACCAG278258AG278259
length1,2761,254
length of high quality
(start - end)		733 (76 - 808)780 (78 - 857)
definitionCHROMAT_FILE: MSMg01no048_i04.b1 PHD_FILE: MSMg01no048_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:32 2005CHROMAT_FILE: MSMg01no048_i04.g1 PHD_FILE: MSMg01no048_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:32 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TTTTTTACATTGGNCGCTAAGACTCCTAAGGGAGAGGATCCGCGGAATTC
CTAGCTGTGAGATAGTCCTTAAATCAAGGCATTCATTGGTGCTTTCAGAA
CATAAAACAACAGCTAGATGTGGACATTTTGCAAATACTGGCAATACCTT
GTGATTAGATCTATGTGGCAAATGTCTGCAGAAATTTGAGAGGACTAAGG
ACTACACGAAAGAGAACCAACTTATCCAAGAAGTAAGATAAAATGTATGT
GCAGGTCTGTCCACTGATAATTAAGCACTAACATCTTGCTCTACACTGTA
GAAGAAGAGAGGATTTGAAGTATACTTCCATCAGCAAGGGGTATTTATAT
TTCTGCCAATTCTTATATCACTTTACCTACCTGTCCCACACGAACCCAAA
CATGTGTAACTAAACATCAACTTCTGAGTTAACAACAGGTTTATTTGTGT
TCATTAAATTGTAAAGCCAGTAATACTCAAGAATTTCAAGAATCCATTGC
CTACAAATTGACATGGATATTATATTAGACAATACCCTTTGGAGTGATCA
CAACATCATACTACATATAAAAATTCTCTTACTGTAATAGATAATTGAAT
GCACATATGTAGTGTGTCTAGACCTCCATAGTCTCACAAGCTTCAAACTG
TGTCAAAGTCTGGATATCTCTTTCAAGATGTATAATAAATTATGTGTTTC
ATTCTTTAACACTTCCTTGCTATAGCCTAATTGTATGGGAATGACTTAAG
GTTCTCTACCATGCATGACTATCGTTATATTTTCTTAAATAAAATTTGAT
ATTTGTAGCCTAGAACAAGTTTTCCCTTTTTTTATTTTTTTGCTTTTACC
TTGGCATTCCATGAATTCATGCTTTATTCTCAAAATTTCTGTTTAAAATG
TTTCTGTTGAAAAGTAGGAGATGTTTTTTAGTTTTAGTTTCAAGAACCAT
GCCTAATATTGTCTGAGCACTTTGACAATGAACTTTTACTCCCCTAACCC
CTTATTTTCCCCCAGTTAAGTAACCCTTATCTTACCCTAAAGGTGACTTT
TCATTTTAATTTCCCCTTTCAGAAAAAAAGTCCTTGAGAAAATTCTTCTA
CCACCTAAAATGTCCTTTCTCCAAAAAAAAATTGTTATCTCAGGCTCCTC
CCATTTTTAAAACCTAGGGGTTTCTCCCTCTTGTGTGGTGGACCTTTCAA
AAAATAGGGGAGGGNCTCCTCAATACAACCTCTTGTTCTTCTTTCAAACC
TTGTTTCTTAAACCTCCTTTACTAAA

TTTTTNTAACAAGTGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCTCTCAACCGAGGAATACTGAATTACCTGA
AAAAATGTTCAGCATCCTTAATCATCAGGCAAATGCAAATCAAAACAACC
CTGAGATTCCACCTCACACCAGTCAGAATGACTAAGATCAAAAATTCAGG
TGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACAATCCCCCATT
GTTGGTGTGATTGCAAGCTTGTACAACCATTCTTGAAATCAGTCTGGCAG
TTCTTCAGAAAATTGGACATAGTACTACCAGAGTATCCCGCAATACCTCT
CCTGGGCATATATCCAGAAGATATTCCAAATGATAAGAAGGACACATCCT
CCACTATGTTCATAGCAGCCTTACTTATAATAGCCAGAAGCTGGAAAGAA
CCCAGATGCCCCTCAACAGATGAATGGATACAAAAAATGTGGTACATTTA
CACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTTTGAAATTTC
TAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGTGGTAACCCAA
TCACAGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAG
AAGCTTAGAATACCCAAGATATAAGATACAATTTGCCAAACACGTGAAAC
TCAAGAAGAACGAAGACCAAAGTATGGACACTTTGCCTCTTCTTAGAATT
GGGAACAAAACACCCATGGAAGGAGTTACAGAGACAGTTTTGAAGCTGAT
ACGAAAGGATGGACCATCTATAGAATGCCATATCTGGGCATCCATCCCAT
AATCAGCCTCCAAACGCTGACACCATTGCATACAATAGCAAGATTTTGCT
GAAAGGACCCAGATATAGCTGTCCCTTGTGAGACTATTGCCGGGGCCTAG
CAACACAGAAGCGGATGCTTACAGTCAGCTTATTGATAAATCACAGGGCC
CCCAATGGAGGAAGTAGAAGATGTACCCAAGGAGCTTGGGGGATCTAAAA
CCCTATAGGTGGGACACCCAAATGAACTTACCAGTACCTCCTGGGAGCTT
AGGGTTTCTGTTGCCCATGTTTCAAAAAAGGGTCTATTCCCCCTCCTTGG
GAAAAAAACCCCCTTGGTGGGGCAACATTTTTTGGCCTCCCAAAGGGGAA
ATCTCGGCCCAAAAAAGTAGTGGGTTGGTGGTAGAATAGTATCATTTTCT
CTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_i04.b1 MSMg01no048_i04.b1 CHROMAT_FILE:
MSMg01no048_i04.b1 PHD_FILE: MSMg01no048_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:32 2005
         (733 letters)



>mm_chr17_40445982_40447116
          Length = 1135

 Score = 1332 bits (689), Expect = 0.0
 Identities = 723/735 (98%), Gaps = 2/735 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggcattcattggtgctttcagaacataaaacaacagctagatgtggacattttgcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 aaggcattcattggtgctttcagaacataaaacaacagctagatgtggacattttgcaaa 876

                                                                       
Query: 61  tactggcaataccttgtgattagatctatgtggcaaatgtctgcagaaatttgagaggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 875 tactggcaataccttgtgattagatctatgtggcaaatgtctgcagaaatttgaggggac 816

                                                                       
Query: 121 taaggactacacgaaagagaaccaacttatccaagaagtaagataaaatgtatgtgcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 taaggactacacgaaagagaaccaacttatccaagaagtaagataaaatgtatgtgcagg 756

                                                                       
Query: 181 tctgtccactgataattaagcactaacatcttgctctacactgtagaagaagagaggatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tctgtccactgataattaagcactaacatcttgctctacactgtagaagaagagaggatt 696

                                                                       
Query: 241 tgaagtatacttccatcagcaaggggtatttatatttctgccaattcttatatcacttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tgaagtatacttccatcagcaaggggtatttatatttctgccaattcttatatcacttta 636

                                                                       
Query: 301 cctacctgtcccacacgaacccaaacatgtgtaactaaacatcaacttctgagttaacaa 360
           |||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||
Sbjct: 635 cctacctgtcccacacgaacacaaacatgtgtaactaaatatcagcttctgagttaacaa 576

                                                                       
Query: 361 caggtttatttgtgttcattaaattgtaaagccagtaatactcaagaatttcaagaatcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 caggtttatttgtgttcattaaattgtaaagccagtaatactcaagaatttcaagaatcc 516

                                                                       
Query: 421 attgcctacaaattgacatggatattatattagacaataccctttggagtgatcacaaca 480
           ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
Sbjct: 515 attgcctacaaattgacatggatattacattagacaatactctttggagtgatcacaaaa 456

                                                                       
Query: 481 tcatactacatataaaaattctcttactgtaatagataattgaatgcacatatgtagtgt 540
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 455 tcatactacatataaaaattctcttactgtaatagataattgaatgcacacatgtagtgt 396

                                                                       
Query: 541 gtctagacctccatagtctcacaagcttcaaa--ctgtgtcaaagtctggatatctcttt 598
           |||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||
Sbjct: 395 gtctagacctccatagtctcacaagcctcaaattctgtgtcaaagtctggatatctcttt 336

                                                                       
Query: 599 caagatgtataataaattatgtgtttcattctttaacacttccttgctatagcctaattg 658
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 335 caagatgtataataaattatgtgtttcattccttaacacttccttgctatagcctaattg 276

                                                                       
Query: 659 tatgggaatgacttaaggttctctaccatgcatgactatcgttatattttcttaaataaa 718
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tatgggaatgacttaaggttctctaccatgcatgactatcgttatattttcttaaataaa 216

                          
Query: 719 atttgatatttgtag 733
           |||||||||||||||
Sbjct: 215 atttgatatttgtag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 733
Length of database: 1135
Length adjustment: 10
Effective length of query: 723
Effective length of database: 1125
Effective search space:   813375
Effective search space used:   813375
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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