Query= MSMg01no050_d08.b1 MSMg01no050_d08.b1 CHROMAT_FILE:
MSMg01no050_d08.b1 PHD_FILE: MSMg01no050_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:12 2005
(417 letters)
>mm_chr17_50022960_50023777
Length = 818
Score = 729 bits (377), Expect = 0.0
Identities = 395/401 (98%), Gaps = 1/401 (0%)
Strand = Plus / Minus
Query: 16 gaattctttc-accccccactctgggtttctgtgagctaaactgcctcctagagacgtag 74
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gaattctttcaaccccccactctgggtttctgtgagctaaactgcctcctagagacgtag 557
Query: 75 atcactcagcttcgtcttgtttgaggagtcaaagcgtctcctcttatggagactaatggt 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 atcactcagcttcgtcttgtttgaggagtcaaagcgtctcctcttatggagactaatggt 497
Query: 135 gtccaatggtcagaaagtctctggcttcccaattagaccagatcctgtgtgatggctcac 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gtccaatggtcagaaagtctctggcttcccaattagaccagatcctgtgtgatggctcac 437
Query: 195 atttattgtcaactgaaatcatcacactgacgggtcctcagcgccatcatctatctcggt 254
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 atttattgtcaattgaaatcatcacactgacgggtcctcagcgccatcatctatctcggt 377
Query: 255 tttggctctgcggagcaccttagcagcacacggcatgcctggacttccgctgccatgaga 314
|| ||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 376 ttcggctctgtggagtaccttagcagcacatggcatgcctggacttccgctgccatgaga 317
Query: 315 gcacctgggacacactcatccctgccccacattccctgcacacactgtctgtcatcccct 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gcacctgggacacactcatccctgccccacattccctgcacacactgtctgtcatcccct 257
Query: 375 cagggagaacagatgatcctcgagaggagaaaggtgacact 415
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 cagggagaacagatgatcctcgagaggagaaaggtgacact 216
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 818
Length adjustment: 9
Effective length of query: 408
Effective length of database: 809
Effective search space: 330072
Effective search space used: 330072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no050_d08.g1 MSMg01no050_d08.g1 CHROMAT_FILE:
MSMg01no050_d08.g1 PHD_FILE: MSMg01no050_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:12 2005
(547 letters)
>mm_chr17_49882110_49883055
Length = 946
Score = 963 bits (498), Expect = 0.0
Identities = 534/546 (97%), Gaps = 1/546 (0%)
Strand = Plus / Plus
Query: 1 ttgtcaggcaaatagacctctgagcatatccccatgaaccaggtataggttaactgagat 60
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 ttgtcaggcaaatagacctctgagcatatccaaatgaaccaggtataggttaactgagat 260
Query: 61 ggtaaggcccacctgaaagtaggtgacaccatcctgtcactgaggtcctggactgcataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtaaggcccacctgaaagtaggtgacaccatcctgtcactgaggtcctggactgcataa 320
Query: 121 aaatgagaaaggcagctgggcaccagcgttcttccatctctacaccttgtctgtgggtgc 180
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 321 aaatgagaaaggcagctgggcactagcgttcttccatctctacaccttggctgtgggtgc 380
Query: 181 ttgcttcaagctcctgcaaacatgactttcgcaccacgatagactgcagcccttcaaacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgcttcaagctcctgcaaacatgactttcgcaccacgatagactgcagcccttcaaacc 440
Query: 241 ctgagccagggtaaacccgcctccaccacgttgctagtatttgtcagagcagtgacgaaa 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 441 ctgagccagggtaaacccgcctccaccatgttgctagtatttgtcagagcagtgaggaaa 500
Query: 301 gaaactggtgcaaacctggaaaaccaccatgcaggtctcaaagatcaagctccagggtag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaactggtgcaaacctggaaaaccaccatgcaggtctcaaagatcaagctccagggtag 560
Query: 361 tggagtgaacagcacgtggctatgagtcttaggaagcccgcgaaacacacagcgtggttt 420
|||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 561 tggagtgaacag-acgtggctatgagtcttaggaagccagggaaacacacagcgtggttt 619
Query: 421 taatttttatcccctgcctgagactctgcgtcaatgcaacgatccacgtaatttattttt 480
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 620 taatttttatcccctgcctgagactctgcgtcaatgcaatgatcaacgtaatttattttt 679
Query: 481 ctgaggtcagttcctgtctgagatgtctctatgatagagaatcgagaagtatcttgctta 540
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 680 ctgaggtcagttcctgtctgagatgtctctatgatagagaattgagaagtatcttgctta 739
Query: 541 gcgact 546
||||||
Sbjct: 740 gcgact 745
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 946
Length adjustment: 10
Effective length of query: 537
Effective length of database: 936
Effective search space: 502632
Effective search space used: 502632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
