Query= MSMg01no052_g01.b1 MSMg01no052_g01.b1 CHROMAT_FILE:
MSMg01no052_g01.b1 PHD_FILE: MSMg01no052_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:59 2005
(548 letters)
>mm_chr17_60441636_60442583
Length = 948
Score = 1015 bits (525), Expect = 0.0
Identities = 540/545 (99%), Gaps = 2/545 (0%)
Strand = Plus / Minus
Query: 5 gaattcttatattaagcag-atcagccttctatgtcctaagttatcttaagttaaattta 63
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 gaattcttatattaag-agtatcagccttctatgtcctaagttatcttaagttaaattta 760
Query: 64 ctttcacatatatctgcattatttatattttcataaaattgaagtatagatagttactct 123
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 759 ctttcacatatatctgcattatttatattttcataaaattgaagtacagatagttactct 700
Query: 124 ataatataaataatagtttaagttaattaatttaaatgaagacatgcgaaatcaagaaca 183
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 atactataaataatagtttaagttaattaatttaaatgaagacatgcgaaatcaagaaca 640
Query: 184 tagagttttaaaaggtcactctgactttgaaccccaggaattattcaccctgcactaaat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tagagttttaaaaggtcactctgactttgaaccccaggaattattcaccctgcactaaat 580
Query: 244 aatattcaattcaaccaggttagaaagggaaggaacaaagtgaagagcaataatcagtat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 aatattcaattcaaccaggttagaaagggaaggaacaaagtgaagagcaataatcagtat 520
Query: 304 tatcatgtatttccatccatacaaaagctattgtgatcttatttatggaagaagaacaga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tatcatgtatttccatccatacaaaagctattgtgatcttatttatggaagaagaacaga 460
Query: 364 gtaatttagatagttatcaaagtaaaagggagaaaaaatgcaatttagtggccagaaatt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gtaatttagatagttatcaaagtaaaagggagaaaaaatgcaatttagtggccagaaatt 400
Query: 424 ttcatgcaagttcaatggacggttcagagatttttgttgtttgttttttgcttttttgtt 483
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 399 ttcatgcaagttcaatggacggttcaaagatttttgttgtttgttttttgcttttttgtt 340
Query: 484 tgtttgtttgttttggttggttggttggttggctttgttttgttttattttgttttgttt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tgtttgtttgttttggttggttggttggttggctttgttttgttttattttgttttgttt 280
Query: 544 tcaac 548
|||||
Sbjct: 279 tcaac 275
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_g01.g1 MSMg01no052_g01.g1 CHROMAT_FILE:
MSMg01no052_g01.g1 PHD_FILE: MSMg01no052_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:59 2005
(629 letters)
>mm_chr17_60328018_60329046
Length = 1029
Score = 1062 bits (549), Expect = 0.0
Identities = 614/643 (95%), Gaps = 14/643 (2%)
Strand = Plus / Plus
Query: 1 aagtgggcttgttttgtgtgctcatattggagttgcaccaactgagcgacaaccagggac 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 187 aagtgggcttgttttgtgtgctcataatggagttgcaccaactgagcgacaaccagggac 246
Query: 61 ctggttgtttttataatgtgtagacgagaggaagatgttagatactgttagtaagcagtc 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cttgttgtttttataatgtgtagacgagaggaagatgttagatactgttagtaagcagtc 306
Query: 121 tctatagactgtgcttttaaacatcctacaggaggaaactaa----aatgcctccatata 176
||||||||||||||||||||||||||||||||||||| |||| ||| |||||| |||
Sbjct: 307 tctatagactgtgcttttaaacatcctacaggaggaagctaaagccaatacctccacata 366
Query: 177 ctggtcaattgctcataaacactcatgcttgcacacactgtccacattcatacttggctc 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ctggtcaattgctcataaacactcatgcttgcacacactgtccacattcatacttggctc 426
Query: 237 ccaagaagtctttgacttccttctgatccttaatggaagatacacattcaccagtatttc 296
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cccagaagtctttgacttccttctgatccttaatggaagatacacattcaccagtatttc 486
Query: 297 gtcttctcagactggatcttcattatgcaagataaactttgtattaccagtgcatgatag 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 atcttctcagactggatcttcattatgcaagataaactttgtattaccagtgcatgatag 546
Query: 357 agtatgcagtggaaacacctgctcaattttgcaaa--aataaataaataaataaataaat 414
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 547 agtatgcagtggaaacacctgctcaattttgtaaataaataaataaataaataaataaat 606
Query: 415 aaataaataaataaat--------ggaattaaaccccttcttttgagtgcatattgaatt 466
|||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 607 aaataaataaataaataaataaaaggaattaaaccccttcttttgagtgcgtattgaatt 666
Query: 467 gttatgtttgtgcttgtatcttaaactattttaactttgaactcattttgcagggataaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 667 gttatgtttgtgcttgtatcttaaactattttaactttgaactcattttgcagagataaa 726
Query: 527 tcacatttgcaaatggtgttacctacttcgaacgcattgcaagttagtacaatctactaa 586
||||||||| | ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 727 tcacatttgtagatggtgttacctacttcaaatgcattgcaagttagtacaatctactaa 786
Query: 587 ctttagctgatgactttaaaacaataaattaatgtaaagtagg 629
|||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 787 ctttagctgatgactttaaaacaataaattgatgtaaagtagg 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
