Query= MSMg01no052_j09.b1 MSMg01no052_j09.b1 CHROMAT_FILE:
MSMg01no052_j09.b1 PHD_FILE: MSMg01no052_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:15 2005
(521 letters)
>mm_chr17_36064346_36065266
Length = 921
Score = 555 bits (287), Expect = e-162
Identities = 302/311 (97%), Gaps = 7/311 (2%)
Strand = Plus / Minus
Query: 1 gctgctgaaaccaccagagggtccagccacgaggataagcctgataagcttatcacttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gctgctgaaaccaccagagggtccagccacgaggataagcctgataagcttatcacttga 252
Query: 61 gagggcactgcttcttgcaacttatctaactgacatgactcttatggaaggtgtactggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gagggcactgcttcttgcaacttatctaactgacatgactcttatggaaggtgtactggg 192
Query: 121 ctagttttgtgtcaacttgacacagctggagttatcacagagaaaggagcttcagttggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ctagttttgtgtcaacttgacacagctggagttatcacagagaaaggagcttcagttggg 132
Query: 181 gaaatgcctccatgagatacaactgcaaggcatttcctcaattaatgatcaagggggaaa 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 131 gaaatgcctccatgagatacaactgtaaggcatttcctcaattaatgatcaagggggaaa 72
Query: 241 ggccccttgtgtctgggaccatctctgggctagtagtct-------ataagagagcaggc 293
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 71 ggccccttgtggctgggaccatctctgggctagtagtcttggttctataagagagcaggc 12
Query: 294 tgagcaagcca 304
|||||||||||
Sbjct: 11 tgagcaagcca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_j09.g1 MSMg01no052_j09.g1 CHROMAT_FILE:
MSMg01no052_j09.g1 PHD_FILE: MSMg01no052_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:15 2005
(509 letters)
>mm_chr17_35996206_35997114
Length = 909
Score = 969 bits (501), Expect = 0.0
Identities = 507/509 (99%)
Strand = Plus / Plus
Query: 1 caaaggtaagagcaaattgatgcttgccagaccatgagtacacagaagctgttcaagggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaggtaagagcaaattgatgcttgccagaccatgagtacacagaagctgttcaagggg 260
Query: 61 tctagtgttcccctgtggggagttgaaagacttggaatcagaaagaggaagtgattgtac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctagtgttcccctgtggggagttgaaagacttggaatcagaaagaggaagtgattgtac 320
Query: 121 ataatgcagaatattaagtactaatgtataaaagggttgggttttttttgctttatgaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataatgcagaatattaagtactaatgtataaaagggttgggttttttttgctttatgaat 380
Query: 181 ttcacttcaataaaaaagttgcttgctttatattttcctgcagtgaattatgtataagct 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcacttcaataaaaaagttgcttactttatattttcctgcagtgaattatgtataagct 440
Query: 241 tagagaactattggtggttggcacaaatgaggcccaactcatgacaggcaattgctttac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagagaactattggtggttggcacaaatgaggcccaactcatgacaggcaattgctttac 500
Query: 301 aactcattcacaccccagttatatgcttgatctttaaggtttttcttttttggtggtgcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aactcattcacaccccagttatatgcttgatctttaaggtttttcttttttggtggtgcc 560
Query: 361 gggggttgaatctaaggcttcctgaaatgctgctcaaaagcttcaccgctaagcagtagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggggttgaatctaaggcttcctgaaatgctgctcaaaagcttcaccgctaagcagtagt 620
Query: 421 cctagaccattgttcatttgatgcctgtggaggccagaagtcagccttggatgtctttcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctagaccattgttcatttgatgcctgtggaggccagaagtcagccttggatgtctttcc 680
Query: 481 ttgggccactttgtttttctttgagatag 509
| |||||||||||||||||||||||||||
Sbjct: 681 tcgggccactttgtttttctttgagatag 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
