BAC Information

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BAC

Clone NameMSMg01-053N17
Chromosome17 (Build37)
Map Location 49,835,985 - 49,836,412
singlet/doubletsinglet
Overlap geneKif6
Upstream geneLrfn2, 1700008K24Rik, LOC672972, Mocs1, Daam2
Downstream geneEG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl, Plcl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053N17.T7 (MSMg01no053_n17.b1)MSMg01-053N17.TJ (MSMg01no053_n17.g1)
ACCAG281954AG281955
length724718
length of high quality
(start - end)
250 (67 - 316)440 (71 - 510)
definitionCHROMAT_FILE: MSMg01no053_n17.b1 PHD_FILE: MSMg01no053_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:53 2005CHROMAT_FILE: MSMg01no053_n17.g1 PHD_FILE: MSMg01no053_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXCTATTTCAAGAGGATCCGCGGAATTCTC
TGTTTACCCCTGTACCCATTTTTAATGGGGTTATTTGAATTTCTGGAGTC
CAGCTTCTTGAGTTCTTTGTATATATTAGATATTAGTCCCGTATCAGATT
TAGGATTGGTAAAAATCCTTTCCCAATCTGTGGGTGGCCTTTTTGTCTTA
TTGACAGTGTCTTTTGTCTTACAGAAGCTTTGCAATTTTATGAGGTCCCA
TTTGTCGATTCTTGATCTTACAGCACAAGCCATTGTTGTTCTGGTCAGGA
AAATTTCCCCTGTGTCTTTATCTTCAAGGTTTTCCCCCTCTTTCTCCTCT
ATAATTTTCAGCGTCTCTGGTATCCAGTACCCTCAGAGTTTGTGTCTCTA
GCTGCTTATGTATTATATGATGGTCTATTCGTTTATCATTGGGAAGAGAG
GTTTCTTGTTCCCGCACACTTTATTTGTCCCATTTCCGGCCATATCCCTC
TTCACCAACGTTCGTTTTTCTTTTACCTATCCCCCTCCCTTTTTTTTTTC
CTTTCCCCCCCCTCATTCCTCCTTTTTTTTTTCCCTTTTTTTTCCCTCTA
TTCTTATCTTACTCCTCCACCCCCTTCTTCCCCTACTTCCTCATAGTCAC
CCTCCTTAATCTTTTATTCCATTATCCCCTTATTCCCTTCCCCCTATTTA
TTCTTTTTACCCCTCCTTATCCCC
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTGATGAGCCATAAGCAGTGCATCAGGACT
ACCAGTCAGTTCCTTGAAGAAACAGAGATAAGGAGGCAAGCGCCAGCGCT
CTTTGTCTCACTCATGTCTTCTTTCTCCTGCCTCACTGAGGGTGTAGCGT
TTTATAAGCACCTCCGAGCTGGTGCCCAGTACTGAAGACAGACGGAGACC
ACGAATCTTCATGTCTCCATCCAGCGCTGTCCACCTAGTACAATGGTTTC
CAGTAGCCAGCCATTGCTGGGTCGCACCACTAGGCTCCCCAGAATTCCTC
TCCTCTTTGCAAACATAAGACCTTCCATGAATGGCCTGTTTTGATCCATG
GCATGGTTGGGTCCTGACAGTCATGTTTAGCGAAGTCTAATTAGCTCTCA
GATAGCATAATAGGACAGCCGGGTAGAAATAAGGTTTTGTGTTAGTTTCT
CAAAGTTACAGGCAAGACATGACCCTTTGCACATGAGATCCACACAGTCT
ACCTACGATATTCATTGCTCCCTGGTGAGCATGAATGTATATAACCCCAG
ATCCCCACATATGCCTTCGCTTTTATCCTGTCTGACTGAAGATATATATC
TGTCTTTATTTTCAATGGTTATCATTAACCTACCTCTATTATGTTAACAC
TTTTTCTCTACTCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_n17.g1 MSMg01no053_n17.g1 CHROMAT_FILE:
MSMg01no053_n17.g1 PHD_FILE: MSMg01no053_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:53 2005
         (440 letters)



>mm_chr17_49835917_49836756
          Length = 840

 Score =  777 bits (402), Expect = 0.0
 Identities = 425/440 (96%), Gaps = 12/440 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgatgagccataagcagtgcatcaggactaccagtcagttccttgaagaaacagagata 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ttgatgagccataagcaatgcatcaggactaccagtcagttccttgaagaaacagagata 437

                                                                       
Query: 61  aggaggcaagcgccagcgctctttgtctcactcatgtcttctttctcctgcctcactgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aggaggcaagcgccagcgctctttgtctcactcatgtcttctttctcctgcctcactgag 377

                                                                       
Query: 121 ggtgtagcgttttataagcacctccgagctggtgcccagtactgaagacagacggagacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ggtgtagcgttttataagcacctccgagctggtgcccagtactgaagacagacggagacc 317

                                                                       
Query: 181 acgaatcttcatgtctccatccagcgctgtccacctagtacaatggtttccagtagccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 acgaatcttcatgtctccatccagcgctgtccacctagtacaatggtttccagtagccag 257

                                                                       
Query: 241 ccattgctgggtcgcaccactaggctccccagaattcctctcctctttgcaaacataaga 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct: 256 ccattgctgggtcgcaccactaggctccccagaattcctctcctctttgcaaa------- 204

                                                                       
Query: 301 ccttccatgaatggcctgttttgatccatggcatggttgggtcctgacagtcatgtttag 360
                ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 203 -----catgaatggcctgttttgatccatggcatggttgggtcctgacagtcatatttag 149

                                                                       
Query: 361 cgaagtctaattagctctcagatagcataataggacagccgggtagaaataaggttttgt 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 148 cgaagtctaattagctctcagatagcataataggacagccgggtagaaatcaggttttgt 89

                               
Query: 421 gttagtttctcaaagttaca 440
           ||||||||||||||||||||
Sbjct: 88  gttagtttctcaaagttaca 69


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)