BAC Information

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BAC

Clone NameMSMg01-053P05
Chromosome17 (Build37)
Map Location 70,260,350 - 70,260,573
singlet/doubletsinglet
Overlap genenone
Upstream geneEpb4.1l3, 2410021H03Rik, Zfp161, C030034I22Rik, A930029G22Rik, A330050F15Rik, LOC100043623, LOC668720, LOC673535
Downstream geneLOC100043630, LOC623112, LOC623143, Dlgap1, Tgif1, LOC668724
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053P05.T7 (MSMg01no053_p05.b1)MSMg01-053P05.TJ (MSMg01no053_p05.g1)
ACCAG282018AG282019
length717736
length of high quality
(start - end)
226 (44 - 269)---
definitionCHROMAT_FILE: MSMg01no053_p05.b1 PHD_FILE: MSMg01no053_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:01 2005CHROMAT_FILE: MSMg01no053_p05.g1 PHD_FILE: MSMg01no053_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTACCTACCACACCTCATCTCAAAGGAAGAAATTGCTGGCTTGCAG
ATGTTTTGTATTTCTTTTGGTGTTTGCTCAATTTATGACACACTTGTAAC
CTTATTAGGTCAGCTGACGTATTCTCTACTATCTTCTTTCTTTTGAGGAT
TTATTTACTTTTAAACATTTATGTGTATGAAAGTTTGCCTGCATTTCTAC
ATGTATCCCATGTTCATGCCTGCAATGTCAGAATAGAGCATCAGATGTTC
AGAAACTGGAGTCAGAGATAGTTATATGCTGCCTTGTATGTGTCATGAAC
TAAATTCTGGCCCTGATAGGTTTTTTAATGCTCATTGCTCTTGAGCCTTC
TCTCCAGCCTTGTGCTATATTGCATATCGTATATTCTACACTCTTGTTTA
CTTACTAATATAGCCAATTGCTTTGTCTTCTTCTTCAGCATATATTAATC
TATATTTGATCATTTTCTATATAACTTCACACTTATGTCGTATGTATATT
AGCACGACTGTTTCACGCTTTGTTTTTTTCCTTTTTTTTCACTATCTCAG
AACCTTGTCTCCGAACCCTAGTTGCCCTACTTCCTCGTACTGATCTCCTT
TACCATCGTTTCCTATTTTGACTGTTCTCCCATGCCTATTTGATTCCCAT
GTTTTCTCTGTACTCAG
TCATTATAGTGGGAGGCCTGGAGGCCGCCTGCTTCACAAATAGAGGGTGA
ACTATAGAATTATCCCCGAAATTCTTTTCAGACTGGCATGGTGAAAAAGC
ACAGGATTACTTACATCACTCCTTTCCTACGTCCCTATTTTAAGTGTCTG
CTACTCTGACGCTCTGTTGTGTGAATACCGATCTCCCTCGTCTGCACAAG
CGCTAGACCATTGAAACTTTGTCTAGAACAAACTCCACTACACCCATCAA
TGTTATTGTCCCTGAGCTCATATACGTCCTTATCCTGACAATGCCCCCTT
ATCGCAGTACCTTAATAGCTATCCCTTTTTTCACCTGCTTCGACTGACCA
GCCAAGTGTGGTATAGGCATCTACATTCCCTCCCCCCTTATGATTAATCC
GAGTCTACATCACTACTTCCCACCCACACACCTCCCACGGTAAAACGATT
TTATGTTTAGCCCGTTCCCCCAAGCACAACGCACAGCTACTTTGTCTCAT
ATTTTACCCCTGCGTCCCGCGTCCCAACCCCTATCTCGACCTTTTAACAA
TTTTCCTCGCCTAACCCTGTTATCCCCCTCTTCCCTCAACTTTCTGTTCC
CTCTATTATATGCCCTTTCCTTTTCCCATGCCCCCTATACACCCAATACC
CCCTGAATATCTCTTTCCCCCTTATTTATCCCTATTCTCCATATCATTCA
CAACACCACCCTTCCCTTTTCACATCGCACTCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_p05.b1 MSMg01no053_p05.b1 CHROMAT_FILE:
MSMg01no053_p05.b1 PHD_FILE: MSMg01no053_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:01 2005
         (226 letters)



>mm_chr17_70260147_70260773
          Length = 627

 Score =  395 bits (204), Expect = e-114
 Identities = 219/224 (97%), Gaps = 1/224 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttacctac-cacacctcatctcaaaggaagaaattgctggcttgcagatgtt 62
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttacctacacacacctcatctcaaaggaagaaattgctggcttgcagatgtt 263

                                                                       
Query: 63  ttgtatttcttttggtgtttgctcaatttatgacacacttgtaaccttattaggtcagct 122
           ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 264 ttgtatttcttttggtgtttgctcaatttatgatacacttgtaaccttgttaggtcagct 323

                                                                       
Query: 123 gacgtattctctactatcttctttcttttgaggatttatttacttttaaacatttatgtg 182
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 324 gacgtattctctactatcttctttcttttgaggacttatttacttttaaacatttatgtg 383

                                                       
Query: 183 tatgaaagtttgcctgcatttctacatgtatcccatgttcatgc 226
           |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 384 tatgaaagtttgcctgcatttctacatgtaccccatgttcatgc 427


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 627
Length adjustment: 9
Effective length of query: 217
Effective length of database: 618
Effective search space:   134106
Effective search space used:   134106
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)