BAC Information

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BAC

Clone NameMSMg01-054N14
Chromosome17 (Build37)
Map Location 49,324,919 - 49,325,160
singlet/doubletsinglet
Overlap genenone
Upstream geneTrem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1, Nfya, AI314976, Apobec2, Bzrpl1, Unc5cl, Lrfn2, 1700008K24Rik, LOC672972
Downstream geneMocs1, Daam2, Kif6, EG668470, Rftn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054N14.T7 (MSMg01no054_n14.b1)MSMg01-054N14.TJ (MSMg01no054_n14.g1)
ACCAG282674AG282675
length813716
length of high quality
(start - end)
194 (179 - 372)242 (74 - 315)
definitionCHROMAT_FILE: MSMg01no054_n14.b1 PHD_FILE: MSMg01no054_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:08 2005CHROMAT_FILE: MSMg01no054_n14.g1 PHD_FILE: MSMg01no054_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGCACCACCACCCCCGCAAGATATTACCCCCCNTTTTTTCTTCTCCTCCC
CCCGCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCAGATTTCCCAGGCAGACACAGGAGGATACCTGGGCTTG
TTGGCCCTTCAACCTAGCGTACTCACCCACTTCCAGGCCTGTGAGAGATC
CTGTCTCAACAAGAAGTATGGTGTGCATCTCCTAAGAAATGACACTCAAG
GCTGTCTTTGGGTCTCTACACACATGCACATGTATGCAAGTGTACCTACA
TACCTCATGGGTACACACCTGCACATAGAGAGATCAAGATGCTAGAATGG
TAGAGCATATATGTAAGCCTAGTTCTCTGCATGAGGATGGGGAGAGGTCA
AGCTGAGTCTATCTCTTTTGCATACCCAGCCTCGTGAAGGTGATGGCAGA
GATCAGAGAATTACCAAACATTCACAGGATTCACTTGAAGCCAGAAGGGT
CAAGGTAGTACTCTCAACTAAAGCTGACAGAGGAAGTGACCCTCTGATTC
TTATATTTTACTCTCCAAAGTTGTAAGGTTAAGATGTCTCTTTTGGGCTA
GGGGAGAAGACTCACTAGAGGACCTTGGGCTTGCATTTCCAAAAAAATCT
GGGTTAATAGTTAAAATTGTCTTGAGAATCCTTATTGTGGGCCTATTGTT
TTAGTTGTGCTCATCATTATCTTTTTCTTTCTCTAATTATTTCTGTATTT
TAGAACCTGCAGTCTTTGACGTCTCGCACCTCCCCCAGTTGATAGTTTTG
CTTATAACCACCG
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATACCTGGGGCCTACATGATGAAAGG
AGAAAACAGACTCCTTCACATTGTCCCCTGACCTCCACATATTCACGATA
GTATTCAAAGACACACACACACACTTTCCTTTGCTCCTAAACAGCTAAGC
ACATAGCTAGTAAACTGAGACCTGGGCTCTGGACTACTCCAGGAAGGACA
TCTTGCCCAGCCTTCTAAGTCAGTGTCCTGTATGCTGGCTTGCTGGTCTG
TTATTTAAAATACCACCTAATATGGCCCTCATGTTCAGCCAGGGTTGGGC
CCTGGCCCATGGCTGCTTTAAGGATCAGATCAACACTTGTGATCCTTCCT
CTGCAAGCAGACTCACTCCTGAAGCCCCAGTGTCTGGCTGGGCCTTGCCT
CTGCAGGGAAAGTGGCTGGTGTGAAATTTAATCACCTCCTTATAAGTATA
GCCCAGCTCCCCAGGGGACGCTTGTTCACCCAGTGTGAAATCATCAAGTT
TATCTTATGGTTTCCGAACTTACATATTCTCCCTCATTGGAGCTCTTCTT
CTGCATTACAGAGAAAGCCTTGTCTGCTTATGTCGCCTGAGGGCATCCCG
CCTCAGTGACCAGTTATCCCGCGCCTGTACGTTACGGTTAATAAGTTTCC
TGACCAGCCCAATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_n14.g1 MSMg01no054_n14.g1 CHROMAT_FILE:
MSMg01no054_n14.g1 PHD_FILE: MSMg01no054_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:08 2005
         (242 letters)



>mm_chr17_49324618_49325259
          Length = 642

 Score =  453 bits (234), Expect = e-132
 Identities = 240/242 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatacctggggcctacatgatgaaaggagaaaacagactccttcacattgtcccctgacc 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 543 aatacctggggcctacatgatgaaaggagaaaacagactccttcaaattgtcccctgacc 484

                                                                       
Query: 61  tccacatattcacgatagtattcaaagacacacacacacactttcctttgctcctaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tccacatattcacgatagtattcaaagacacacacacacactttcctttgctcctaaaca 424

                                                                       
Query: 121 gctaagcacatagctagtaaactgagacctgggctctggactactccaggaaggacatct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 423 gctaagcacatagctagtaaactgagacctgggctctggactactccaggaagggcatct 364

                                                                       
Query: 181 tgcccagccttctaagtcagtgtcctgtatgctggcttgctggtctgttatttaaaatac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tgcccagccttctaagtcagtgtcctgtatgctggcttgctggtctgttatttaaaatac 304

             
Query: 241 ca 242
           ||
Sbjct: 303 ca 302


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)