BAC Information

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BAC

Clone NameMSMg01-055K22
Chromosome17 (Build37)
Map Location 50,119,332 - 50,119,623
singlet/doubletsinglet
Overlap genenone
Upstream geneLrfn2, 1700008K24Rik, LOC672972, Mocs1, Daam2, Kif6, EG668470
Downstream geneRftn1, EG668475, EG628747, LOC100043818, Dazl, Plcl2, EG654432, Tbc1d5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055K22.T7 (MSMg01no055_k22.b1)MSMg01-055K22.TJ (MSMg01no055_k22.g1)
ACCAG283285AG283286
length6921,749
length of high quality
(start - end)
293 (70 - 362)---
definitionCHROMAT_FILE: MSMg01no055_k22.b1 PHD_FILE: MSMg01no055_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:09 2005CHROMAT_FILE: MSMg01no055_k22.g1 PHD_FILE: MSMg01no055_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCATCCTTTCCGAGAGCCTCTTCAGAGTCCAGTGTGCACTGGAGC
AAGCAAGAAAAGAGCCTTCAGCCCTTTATGGCTTTCTACTTATAAGTGAA
GCTGCCGGGCTGACCTTCTGCAGCTTATCACTACTCAGGCAAGGTTGTAC
GGTGTGCTCTCAGCTTTCCAGGGCCTTGAGACATGTTCCTGCTTGTCCCT
CATGCAAGCCTCTTGCTGTTCCACCCTGTGACCCATAAGATACAGCCCTG
TGGTACTGCCAAAATGTGCCCAGCTGCAGAGCTGTTTGCCATTTGTTAAT
CTCTCAGATGATGATCTGACCTGACACACTGGGCTAGGCCAGCCTCTGGA
GTATCCTCAAGGCTGTGAATTGTAAGGCCCTGGGCAGTCCCAGCCAGACT
AGCACTGAGGGCTTGCACCAATAGATTCTGTCCACTTCTCGCTGGAGCAG
CTGAACAGGCATCCTGAGGCTATGCATGCAGGTCAAGTGTCACATATGCC
TGTCCAGGTACCTATGTTTGTTGAGGTCACTTAACACCACAGCTGCCACC
AGCAGTGAATGCACAAGCTCCTGGACGGGCAATACTGCCACAAGCACAGC
GTTTTGCAAGCTGGCATTATGTTACCTAACTGATATTCCGAC
AAACCTAATCGTTTACACACCAACTCACAGTGCATTTAACATAAGAGTAA
GGAGACGATAGATATGACGCGTAACCGATCGGGTAGGGGATGCTAAGATC
GCGGAGCGTATATCGGGAGCTCTGTGCCCCACTANTGAACGATTATATTC
GTTTAGAACCGATTTTTATGCGTCGATGCTTTGTTACGCGCGTCGTATTT
ACCCGTATTCGATCGACACTGAGAAGAGATACATTCCGCACGCCATAATG
CAACGAGACAGAGATATATTAATATGCACGCCTATCATTGCGCTCCCAAC
CCGGGTGGTAATATTCTAGCCACTTCGAATTATTTTTCGCTATTAATGCG
GTCTGTCGCTCCGCTTCATATTCGGGTTACGCAGACTGAGTTCAAGTTAG
TTTATTGATTCGATGTACACGCGCAACGCTATAACGAATACCGGTATTGT
CTAGTGTACTCGCACTATACGTCATCTCTCGCGCGCTGGTCGAGCGCGTA
TAGCGGCTCGTCGCCGCGACCACTTACTATATCTACACTCGCTGGTATTN
TACGTTCGCAGTACATATACTGTGTTTATCGGACTAATATAAGTGTCTCT
TACACTTATTGATGTATCAATGCAATACTTTATATTTCACTTTATACCGC
GCCGTAATCGCGCGCGATTACGAGACATATTAGTGATAAGGTATATGCTG
TGTACGTTAAGGATGTGAACATCTCTCATCGGCGTCGTTCCGCGGCAGAG
CGACCATTATCGTATCTATCAAGATGGAGTGTTATTCCCTTACGTTGTAT
TCCGCGATGCCTCTACGGGCGACGACGACTTTNTGTTTGCTGAGATTATC
GCTATGGCAGACACCACAGCGATATATTTTTTCCGCTTTATGCTATCGCC
GCGTCTTTCTCTGGTTTATTCGCGTCGCCTCGTTGCGAAAGGAACACGGT
GCTCGATGGAGTCGTTATACGCTTATGTAGAGAGATNCGCGATTTGACGC
GGTTCGTATCGTTCCTCGCTATAGTTCCCATGTTATTTGTCTCGCGTACG
CGCCGTGCGCACTCGTCCTGTCTTNGCCTCGAGTTGTCTAACTCATACGA
TCGCCACGCGCTATGTAATACTCGCGGCCTGCGGTCGCGTACTACGCGTT
CGTCACGGCGACATCCTAGTCGCCGCGCGATATCCAATAATGTCATGTTC
ATNTNTCCGCTCGCCGGGCGCGTTATCGTCGACGATATAGTTCTACGCGC
GCGCGAACTGATGCGTGCGTCTGCGCTGAAGTAGTAGTTTATAATCGTAT
ATATAGTATATGTACCCGCACGTCGGAGCGACTCCGGAGAGTCGCCGACG
TGTAATACGCTANTATATAACTTATACGCGCGCGCGCGCATAGTATATCG
GATCCTGTTNGTACAACGTCGTTCTCTAGTCACGCGCGGAGACGCACTGT
CCGCACGACATAATAATTGGCGGATAATATANATANATCCTATCACGGAC
GCATCACCTCGCCGGTAGGAGANCTCTACGAATACTCTGTCTGNGTATAT
ACGACCAGCGTGTACTATGGCTGCTATGAAGTATTGTGTTCGCACACAGA
CGACGACGACGATNAATCAGTAGTGGANATTACTATCTGCTCGTCTATTA
NACGTATGTGCTATNCAGCCGACGTTAGTGCATGTATAGACCTATNCGTA
CGCGCGCGCTGCGTGTTCGANNCGTTATGTATTACCGCTCTGCGTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_k22.b1 MSMg01no055_k22.b1 CHROMAT_FILE:
MSMg01no055_k22.b1 PHD_FILE: MSMg01no055_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:09 2005
         (293 letters)



>mm_chr17_50119132_50119824
          Length = 693

 Score =  526 bits (272), Expect = e-154
 Identities = 287/292 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcctcttcagagtccagtgtgcactggagcaagcaagaaaagagccttcagccctttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 492 agcctcttcagagtccagtgtgcactggagcaagcaagaaaagagccttcagtactttat 433

                                                                       
Query: 61  ggctttctacttataagtgaagctgccgggctgaccttctgcagcttatcactactcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ggctttctacttataagtgaagctgccgggctgaccttctgcagcttatcactactcagg 373

                                                                       
Query: 121 caaggttgtacggtgtgctctcagctttccagggccttgagacatgttcctgcttgtccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 372 caaggttgtacggtgtgctctcagctttccagggccttgagacatgttcctccttgtccc 313

                                                                       
Query: 181 tcatgcaagcctcttgctgttccaccctgtgacccataagatacagccctgtggtactgc 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 312 tcatgcaagcctcttgctgttccaccctgtgactcataagatacagccctgtggtactgc 253

                                                               
Query: 241 caaaatgtgcccagctgcagagctgtttgccatttgttaatctctcagatga 292
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 caaaatgcgcccagctgcagagctgtttgccatttgttaatctctcagatga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)