BAC Information

Click to search

BAC

Clone NameMSMg01-056A04
Chromosome17 (Build37)
Map Location 9,356,578 - 9,356,830
singlet/doubletsinglet
Overlap genenone
Upstream geneFgfr1op, Ccr6, LOC667114, Brp44l, Sft2d1, LOC100038858, 9630019K15Rik, EG435502, LOC433063, T2, T, LOC100040817, Pde10a, 1700010I14Rik, EG667165
Downstream geneEG667170, LOC666143, 4932702K14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056A04.T7 (MSMg01no056_a04.b1)MSMg01-056A04.TJ (MSMg01no056_a04.g1)
ACCAG283525AG283526
length718727
length of high quality
(start - end)
253 (59 - 311)231 (132 - 362)
definitionCHROMAT_FILE: MSMg01no056_a04.b1 PHD_FILE: MSMg01no056_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:33 2005CHROMAT_FILE: MSMg01no056_a04.g1 PHD_FILE: MSMg01no056_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTGTTTT
TCCTAACTATGGAATTAGAAGTAACTCATCGTCTCTTACTGTCTTCAGGC
GTCTCTAGACATTCATGTCATCAGAGTCAGCAGCTGTGTAGCTGCTGTTT
CCTGACAGTATGCTGGGACTCCGAGTGAAGACAGGGCTAGAAAGAAAAAG
AATGTTGTATGCTGAGATTGTATCTCTGTCCTTTTGTCAATTGCATATGT
TTCTGTGTTGTATCATTGCATGTATTACTTTGTTACCCACATACACAGTG
AGATGATTCTTCGGGTAGCAGGTTAGCAGACTCCTCCATCTCAGCTTATC
CATTGTCTCCGCAGCCTTTGGTGGGCATCTCTTCTCCCAGACTGCCCTGT
TCCATGAAGCCCCCAGAGCATTAAGTGACTTGAGCCACACCCTGAGGAGG
ATAGATAGATCTTGGATTCTTTTTGAAGGGCTGGTGTTTTTCACTGATAA
GCACTAAATTTCTCCTCAGAGAAATGAGGTCCTATCGGCTAACTCCGTAC
AGCCTTGGCCCCTAAAACTGGATGTCTACCCCCTGGTGCTCTCCCATGGT
CAAGTCTCCATTGAAAAAACCACCTCTCATAATAATGTCTTGCACAGGGC
TTTCTTCTTGCATACTCTCTGGTCCTATGGCCTCCTCTTCCGTCTGAGGT
TAATCCCCATAATTCCTC
CGATGACACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTGCACGCTCTAACTTTTTACAC
GGGCCATCTCTGGGGCTGGCGGCTCCCTTAGTGAGCGAGAGCCCTTGCTG
CACAAGCATGAGGACCTGAGAACAAATTCCCGGCATCAGGTAAAATGCTG
GGTATGGCCACATAGGCCTCTAACCCAGCATTGCATGGTGGTGGTGGGGG
GCACAGATGGATGATAAACATTGTGGGCAGAGATGGATGATAAACATTGT
GAGGCCTCTGGCCGCACAGCCTATTCAAAACAGTGAGCTTCTGCTTTGGT
GACAGACCCTGCCTCATGGCACTCACCCACAGAGCAAGAGAGAGGACACC
AATGTTCTCCTCTGGCCTCTGCATGCACATTCATGGGAGCACAGCCCACG
CCCACCCCATCATGCACACACACACAATCTTGCACTAACAGGTTAGAGCT
CAATCTCCCTCCTCCAGGAAATCAGCAGGGTTCTCATAACTGAGAGTATG
GGTCTCTACCCCACCTGCAGTTCCCCCCTTACTGTTCATGGAAATGTCTT
TCAAACCTCACACCTAGCAATCTCCCCCCCAAAAATCAAGGGGCTCCTGA
CCTGTGTTTAGTACAAAGTGAAAATACCCCACGCTCTTCTATTAAACCCT
CCACTAGCGCCTCCACCTTTAAAAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_a04.b1 MSMg01no056_a04.b1 CHROMAT_FILE:
MSMg01no056_a04.b1 PHD_FILE: MSMg01no056_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:33 2005
         (253 letters)



>mm_chr17_9356378_9357030
          Length = 653

 Score =  482 bits (249), Expect = e-140
 Identities = 252/253 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggaattagaagtaactcatcgtctcttactgtcttcaggcgtctctagacattcatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 atggaattagaagtaactcatcgtctcttactgtcttcaggcgtctctagagattcatgt 260

                                                                       
Query: 61  catcagagtcagcagctgtgtagctgctgtttcctgacagtatgctgggactccgagtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catcagagtcagcagctgtgtagctgctgtttcctgacagtatgctgggactccgagtga 320

                                                                       
Query: 121 agacagggctagaaagaaaaagaatgttgtatgctgagattgtatctctgtccttttgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agacagggctagaaagaaaaagaatgttgtatgctgagattgtatctctgtccttttgtc 380

                                                                       
Query: 181 aattgcatatgtttctgtgttgtatcattgcatgtattactttgttacccacatacacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattgcatatgtttctgtgttgtatcattgcatgtattactttgttacccacatacacag 440

                        
Query: 241 tgagatgattctt 253
           |||||||||||||
Sbjct: 441 tgagatgattctt 453


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)