BAC Information

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BAC

Clone NameMSMg01-056C18
Chromosome17 (Build37)
Map Location 83,169,866 - 83,170,099
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668832, LOC100043707, LOC625467, LOC668836, EG433141, EG625514
Downstream geneLOC100043711, LOC100043900, AW548124, EG545226, Eml4, Cox7a2l, Kcng3, Mta3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056C18.T7 (MSMg01no056_c18.b1)MSMg01-056C18.TJ (MSMg01no056_c18.g1)
ACCAG283644AG283645
length689702
length of high quality
(start - end)
273 (74 - 346)235 (127 - 361)
definitionCHROMAT_FILE: MSMg01no056_c18.b1 PHD_FILE: MSMg01no056_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:46 2005CHROMAT_FILE: MSMg01no056_c18.g1 PHD_FILE: MSMg01no056_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXTCAAAAAGAGGATCCGCGGAATTCAATC
TGCAAAAGACAGGAATCAGCAGGACAATTCACCCAAATCAGCAGTGGTAG
TTTGTTCCCCCTTTCAAACACCATTCACAAACCAGCAATCGCTGTTCAAT
CCAGACGAAACCATAAGGCTCTGCCAATCAGTCCCAGTGTTCTGAAGCAA
CAAGAAGCCTCCTCAGCAGAACATTACCAGAAGTCCTTTGGTGTATTTCT
CTCTATGAAGTCATAACAAGGGGCACAGGAGCGGACCCTGTGCTACAGCC
CTTCATATTCTAATCCCACCCAGAGAAATCTTGAACCCACAAGTGTTGTT
TTACCCACCCCCACCAGTAAGAAAACCAAAACATCCTCCCACATGTTTGC
TTCAGCATAAACAACCTCTCACGTGTCTGCTTCAGCAATACATCTCTCAT
AAGACAGTTTCTAGAAAAACATCACGTGACACAACTGAGTCTCCAAAACA
CCAGAAATGTCCACTACAAGTATCTTTTCTGTAATTATGCATGATATTTC
CCGCTTGATTTCCCTTTCCTTTTAATTTCCCTGTATTTCCTATGCGTGGA
AATGTTGTCTTTTTTCTTTATCCTTGAGAAATTTCTTTTGCTGCCATCCT
TTCCTCCGGCCTCTGCACACTGCATCACAAAATTCTTTG
NCACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTTCTCCACGGAATTCAAGGGGACAAGGAAGTCTGAA
GGACACTGGAGAATGGCAGGGCCCACAATGGGCCATCCAAATTAACCATA
ACCCTGTATCACAGAAATGAGAAGCTATAGACTGGGCCATGCTCATTTGC
ATGCTGGGAGCTGGAGCACAGAGGAGAGTCCCCATGTAAGAGCAGCCATG
GTTCCCTGCCTTGTGGGTGGCAGTTCTACTCCTGCCCTGATGACTGCTCC
CTTGCAGAAGACCCAATATTCTTCTATTTTCCAACTAATACGTGTTTAAA
AAAAAACAGCATAAACTTCATTTTATCGTTTTCTGTCCCTAATGTAGAAA
CTTAGGGGATAAACTAAGTGATCTTCAGCAGATTTATACTAACATGCACC
TGTACCTTTTCCTTGGAAGACTATGTACTTCCATTAATAAACCAGTATTC
TGCCCACAGAAACTATTACTTTTGTATTACAAAAGCCATTAATTGTAATT
AAACTTAAAGATATTCTGGTGGGACCATGATAATTTTTCAAGCATTGTTG
CTGTACCTTTTGAAAGCCAGTGTCTTAGTCGTCAGTGCTGCGAAGAGACT
CCCATGACCACAGCAATACCTATAAAAGAAAGCATTTCATTGGGGTTCCC
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_c18.g1 MSMg01no056_c18.g1 CHROMAT_FILE:
MSMg01no056_c18.g1 PHD_FILE: MSMg01no056_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:46 2005
         (235 letters)



>mm_chr17_83169665_83170299
          Length = 635

 Score =  391 bits (202), Expect = e-113
 Identities = 226/234 (96%)
 Strand = Plus / Minus

                                                                       
Query: 2   atgggccatccaaattaaccataaccctgtatcacagaaatgagaagctatagactgggc 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 atgggccatccaaattaaccataaccctgtatcacagaaatgagaagctatagactgggc 376

                                                                       
Query: 62  catgctcatttgcatgctgggagctggagcacagaggagagtccccatgtaagagcagcc 121
           |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 375 catggtcatttgcatgctgggagctggagcacagaggtgagtccccatgtaagagcagcc 316

                                                                       
Query: 122 atggttccctgccttgtgggtggcagttctactcctgccctgatgactgctcccttgcag 181
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 315 atggttccctgccttgtgggtggcagttctactcctgccctgatgacagctcccttgtag 256

                                                                 
Query: 182 aagacccaatattcttctattttccaactaatacgtgtttaaaaaaaaacagca 235
           |||||||||||  ||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 255 aagacccaataaacttctattttccaactaatacgtgttttaaaaaaatcagca 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)