Query= MSMg01no056_k19.b1 MSMg01no056_k19.b1 CHROMAT_FILE:
MSMg01no056_k19.b1 PHD_FILE: MSMg01no056_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:24 2005
(246 letters)
>mm_chr17_80527823_80528472
Length = 650
Score = 395 bits (204), Expect = e-114
Identities = 238/250 (95%), Gaps = 4/250 (1%)
Strand = Plus / Minus
Query: 1 ccattttacttcagggtttgttttctgtctggttacgtgcaatgctacccaatggcaaga 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 450 ccattttacttcagggtttgttttctgtctggttacgtgcaatgctaaggaatggcaaga 391
Query: 61 tataattttttctcctgctgcaaatcaaaccgcaatccaatgatttaattatgtaactgt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 390 tataattttttctcctgctgcaaatcaaaccgcaatccaatgatttaattatgtaactat 331
Query: 121 tgagctaaattctgagctc--cgcccc-cccaccccacccc-cggtaaactgcaagttga 176
||||||||| ||||||||| |||||| ||| |||| |||| | ||||||||||||||||
Sbjct: 330 tgagctaaagtctgagctccgcgccccgccctccccccccctccgtaaactgcaagttga 271
Query: 177 aaatgacctttgtctatcttgttgagtccactgcattaacagagctgtaaatgcataaat 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aaatgacctttgtctatcttgttgagtccactgcattaacagagctgtaaatgcataaat 211
Query: 237 taagataaaa 246
||||||||||
Sbjct: 210 taagataaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 650
Length adjustment: 9
Effective length of query: 237
Effective length of database: 641
Effective search space: 151917
Effective search space used: 151917
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no056_k19.g1 MSMg01no056_k19.g1 CHROMAT_FILE:
MSMg01no056_k19.g1 PHD_FILE: MSMg01no056_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:24 2005
(245 letters)
>mm_chr17_80396479_80397123
Length = 645
Score = 439 bits (227), Expect = e-128
Identities = 239/243 (98%)
Strand = Plus / Plus
Query: 1 attcctgggtatttcctttggaaaggtcgtttctcctaaccctggattgctctggaagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 attcctgggtatttcctttggaaaggtcgtttctcctaaccctggattgttctggaagaa 260
Query: 61 ggtggcctaagggcttaaatatctcacaccctttcactgcttaatggtctctttgtggct 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 ggtggcctaagggcttaaatatctcacaccctttcgctgcttaatggtctctttgtggct 320
Query: 121 tttggatgtaacatcctttgcagaaatagacaaagtttatgtcatctagttcagtgcttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttggatgtaacatcctttgcagaaatagacaaagtttatgtcatctagttcagtgcttc 380
Query: 181 ctgggttatgcacatcatcatatgtgttcctttaaccttggggaggaggatgcacagcca 240
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 381 ctgggttatgcacatcatcatatgtgttcctttaaccttggggaggagggtgcagagcca 440
Query: 241 ggc 243
|||
Sbjct: 441 ggc 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
