BAC Information

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BAC

Clone NameMSMg01-057C01
Chromosome17 (Build37)
Map Location 50,906,684 - 50,907,112
singlet/doubletsinglet
Overlap geneTbc1d5
Upstream geneKif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl, Plcl2, EG654432
Downstream geneLOC100043451, LOC100043452, Satb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057C01.T7 (MSMg01no057_c01.b1)MSMg01-057C01.TJ (MSMg01no057_c01.g1)
ACCAG284363AG284364
length708703
length of high quality
(start - end)
553 (48 - 600)428 (70 - 497)
definitionCHROMAT_FILE: MSMg01no057_c01.b1 PHD_FILE: MSMg01no057_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:58 2005CHROMAT_FILE: MSMg01no057_c01.g1 PHD_FILE: MSMg01no057_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAACGGCGG
AATTCTCAACTGATGCCACTCCATGGCTCAGAAGCACCTAAAGAAATGTT
CAGCATCCTTAGCCATTGGGAAATGCAAATCAAAACAACCCTGAGATTCT
ACCTCACACCAGTCAGAATGGCTGAGATCAAAAACTCAGGTGACAGCAGA
CACTGGTGAGGATGTGGAGAAAGAACACTCTTCCATTGCTGGTGGGATTG
TAAGCTGATACAACCACTCTGAAAATTAGTATGGCATCTCCTCAAAAAAC
TAGACATAGTACTGCCTCAGGACACAGCTATACCACTCCTGAGCATATAC
CCAAAAGATGCTCCAACATGTAACAAGGACACATGCTCCACTATGTTCAT
AGCTGCCTAATTTATAATAGCCAGAAGCTAGAAAGACCCCAAATGTCCCC
TCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTA
CTACTCAGCTATTAAAAACAACGATTTTATGAAATTCCTAGGCAAATGGA
TTGAGCTAGAACACATTATCCTGAGTTAGGCAACCAAATCACAAAAGCAC
ATGGTATGCACTAACTGATAAGTGGATATTAGCCCAGAAGCTTGAAATCC
TGAAGATACAATTTCAAGACCCCATGAAGCTCAAGAAGAAAGAAGACCCT
AGTATGCA
CGATGCTAGGTTAGGCTGGCGGCGCCTGGCTTCAAATAGXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATGGCACTGCCACCATACTGCAGAGCCAGCAG
CTATGAATCAAGCAGGATGCCCACCGCCTCCCGATGTTCACAGGCTTGAG
GAGGGGCCTGCTTTCTGATGTAAGAGCTGAATGACTCTAGAAGCGATTAA
GTAACGATCTGAGTATATGATGTACTTCAACTGAGACCAGAAAGAACTGT
AAATTTGGTGGCCATGTGAATCATTTTGGTTAGAAAAGACAGGAAAGGAA
AACAACAAAGATGTATAAGGCAGCATGTTTTACTTAAGAGAACTTAAGAG
CTGTGCACCCCTACAAGGCTAAAGAGAAGTTGGGGAAGGACTAATATGAA
GCTGGCCACAGAAAGATCATCAAAGGCTCCGCAGGCCATTCCTAACACTG
AAGAGGGGGCCATGTAGAGTTCTGATGGGAAGTTAGAAACGATGATTCAG
AATACACAGTAAGCAAAATGGTGCCTGGAATATTTTGGATGAGTTTCTTA
ATTGAATGGATTTACTCTAATTATATGAGATTATTGCTCACTGAGAACAA
AAACATTACGCAGCATATCTTTCTACATTTTTTCCTTTCTAGCCTGTTAA
ACTCACACGGCGAAAGTAACCCCCGTATAGCTACTTGCCTTGTAATGCTT
GCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_c01.g1 MSMg01no057_c01.g1 CHROMAT_FILE:
MSMg01no057_c01.g1 PHD_FILE: MSMg01no057_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:58 2005
         (428 letters)



>mm_chr17_50906484_50907312
          Length = 829

 Score =  775 bits (401), Expect = 0.0
 Identities = 422/429 (98%), Gaps = 1/429 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggcactgccac-catactgcagagccagcagctatgaatcaagcaggatgcccaccgcc 59
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggcactgccacacatactgcagagccagcagctatgaatcaagcaggatgcccaccgcc 260

                                                                       
Query: 60  tcccgatgttcacaggcttgaggaggggcctgctttctgatgtaagagctgaatgactct 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcccgatgttcacaggcttgaggaggggcctgctttctgatgtaagagctgaatgactct 320

                                                                       
Query: 120 agaagcgattaagtaacgatctgagtatatgatgtacttcaactgagaccagaaagaact 179
           ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 321 agaagcgattaagtaacgatctgagtatatgatgtactttaactgagacctgaaagaact 380

                                                                       
Query: 180 gtaaatttggtggccatgtgaatcattttggttagaaaagacaggaaaggaaaacaacaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaaatttggtggccatgtgaatcattttggttagaaaagacaggaaaggaaaacaacaa 440

                                                                       
Query: 240 agatgtataaggcagcatgttttacttaagagaacttaagagctgtgcacccctacaagg 299
           ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 agatgtataagacagcatgttttacttaagagaacttaagagctgtgcactcctacaagg 500

                                                                       
Query: 300 ctaaagagaagttggggaaggactaatatgaagctggccacagaaagatcatcaaaggct 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctaaagagaagttggggaaggactaatatgaagctggccacagaaagatcatcaaaggct 560

                                                                       
Query: 360 ccgcaggccattcctaacactgaagagggggccatgtagagttctgatgggaagttagaa 419
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 ccgcaggccattcctaacactgaagagggggccgtgtagagttctgatgggaagttagaa 620

                    
Query: 420 acgatgatt 428
           || ||||||
Sbjct: 621 acaatgatt 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 829
Length adjustment: 9
Effective length of query: 419
Effective length of database: 820
Effective search space:   343580
Effective search space used:   343580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)