BAC Information

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BAC

Clone NameMSMg01-058I15
Chromosome17 (Build37)
Map Location 87,395,196 - 87,395,444
singlet/doubletsinglet
Overlap geneRhoq
Upstream geneSrbd1, LOC545228, Prkce, Epas1, 1700090G07Rik, Atp6v1e2
Downstream genePigf, Cript, EG433144, Socs5, Mcfd2, Ttc7, 1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2, Kcnk12, LOC626888, LOC668863, EG626920, Msh6, Fbxo11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058I15.T7 (MSMg01no058_i15.b1)MSMg01-058I15.TJ (MSMg01no058_i15.g1)
ACCAG285431AG285432
length704709
length of high quality
(start - end)
249 (62 - 310)132 (97 - 228)
definitionCHROMAT_FILE: MSMg01no058_i15.b1 PHD_FILE: MSMg01no058_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:48 2005CHROMAT_FILE: MSMg01no058_i15.g1 PHD_FILE: MSMg01no058_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGCGTGCGCTAAACGACTCACTTTTCATAGAGGAGCCGCGGAATTCCTC
GCTTTCCTTTTATAATCTTGGAGAAAGGAGTAATTTCTAAATGCATAAAA
GCAAAAGTTATAAATGCAGGTTATCTCAGTACATAAATACGTGCTATTAC
ACTGGATATTAGTAATCAGATTGCTGTGTAGGGCATTAACCATAAAATGA
TTTAATCAGAAGATGGTATAAACCCTAGTGGAAAAGTGCTAAGAACATTC
ATCCGAAGTCACCAAGTCTGAGGAAACTCCAAGGAGAAAGAATAGAAACT
GTGTGTTCTATTTATGCATAGGGGCATAGGCCTTTAATTTCAGCACTCAT
GGGGCATAGGAAGGTGGAGCTCTGTGAGTTCAAGGCTAGCTGTTCTATAG
AGTAAGTTTGAGGACAGCCAGGTTTACATAGGGAAACTGTCTCAAAAAGC
AAGCCAGCAAACAAAAGAAATTGTGTTTTCTTACTCTTCTTGTCTAATAA
CCCAGTAGAATACGCTAATACCCTACCGTGCTCTTATGATACCGTATAGG
AGTGAGTACAGAGTTTAGAGTGCCAGAAGGCAATGTGTTTACTGACCATT
TCAGGGAGATAATTTACGGGATGTAGCATCCCAGCTTCCCTGATATCCTT
CTCTTTAGGAAACGATTAATGTCTACACAGGTTCAGCACCGTTTTTTGCC
TTCG
CCCGCACTGCAGTGNGAGGCCTGGAGGCCGCCTGTTCCACAAAGGGAGGT
GAACTATAGAATTTCCCCGGAATTCATTTTTTAGGCCAGCCTGGTCTTGA
GCTCGGAGCTCCGTCTTCCTCTACCTCCTGAGTGCTAGGGGAAAATGCAT
ACGCCACTAACCCTGGCTTTGCCTACCAGAAATTTATGGTAAGACCCTAT
TGCTAAAGTCATTGCACATTTTGGTCACAGGGCATAAAGAAATCGAGATG
CATCTGAGCTGGACGCATCCTCCCAATGAAGTCTTACTCAGCTGTAACTC
CTATAAGCTACTAATACTGCTTGAGAAGACACGCCCTCTGGGCTCGAAGT
CCTCGGGGAGGTCAGACTTCGGCTGCGGGGCGCAGGGCATGCCGGCATAC
CGGACGTAGGATGTGCCACACATCCAGAATCCCTCTGAAGCAGCAGTGGC
TTGCCTGGTATGGGAATATATATCCAAGCTTTCTGACTGGATCTGAAGTC
TGCTACACAGGTATAAATGCATGCCTGTTACACAAATCTGTTCAAGAGCC
CTGGGCTGAGGCCATAGGCGCTGGTAGGGAATATACCATTGTTGTTTTGC
TAAATCGGCCTGTTGTCCAACAGCTTTGTAAATAATCGCTCGTGCTTATG
TATCCATAAATGAGTGCTGTACTCACTCATCCTTTCGCAGATAAGCTTCT
TTCTGCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_i15.b1 MSMg01no058_i15.b1 CHROMAT_FILE:
MSMg01no058_i15.b1 PHD_FILE: MSMg01no058_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:48 2005
         (249 letters)



>mm_chr17_87394996_87395644
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataatcttggagaaaggagtaatttctaaatgcataaaagcaaaagttataaatgcaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataatcttggagaaaggagtaatttctaaatgcataaaagcaaaagttataaatgcaggt 260

                                                                       
Query: 61  tatctcagtacataaatacgtgctattacactggatattagtaatcagattgctgtgtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatctcagtacataaatacgtgctattacactggatattagtaatcagattgctgtgtag 320

                                                                       
Query: 121 ggcattaaccataaaatgatttaatcagaagatggtataaaccctagtggaaaagtgcta 180
           ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 321 ggcattaaccataaaatgatttaatcagaagatggcatagaccctagtggaaaagtgcta 380

                                                                       
Query: 181 agaacattcatccgaagtcaccaagtctgaggaaactccaaggagaaagaatagaaactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaacattcatccgaagtcaccaagtctgaggaaactccaaggagaaagaatagaaactg 440

                    
Query: 241 tgtgttcta 249
           |||||||||
Sbjct: 441 tgtgttcta 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)