BAC Information

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BAC

Clone NameMSMg01-059N07
Chromosome17 (Build37)
Map Location 48,898,159 - 48,898,271
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419, Trem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1, Nfya, AI314976, Apobec2, Bzrpl1, Unc5cl
Downstream geneLrfn2, 1700008K24Rik, LOC672972, Mocs1, Daam2, Kif6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059N07.T7 (MSMg01no059_n07.b1)MSMg01-059N07.TJ (MSMg01no059_n07.g1)
ACCAG286417AG286418
length698737
length of high quality
(start - end)
623 (72 - 694)114 (72 - 185)
definitionCHROMAT_FILE: MSMg01no059_n07.b1 PHD_FILE: MSMg01no059_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:25 2005CHROMAT_FILE: MSMg01no059_n07.g1 PHD_FILE: MSMg01no059_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXCTATTTTCAGAAGAGCGCGG
AATTCACAAGGATACCGAAGCACAGAAGAGAATTCAAGCTGAAATGAAGA
GGGAACTGGAAAAACCCAAGAGCCCAACCAGAAAACTCAAAGCAAAGATC
ACATGTGGAATGGATCAAACAGAAGGCAGAATATCAATACCCAAAGATAA
AGTAGAGGATCTAGACCAAATAAACAAAGAAAATTAAATCAAATCAACCA
GAGGAAAAGAAGACATAGGAATTGTGAGATACCATAAAAACAAACAAAAC
TTTGAATGACAGGCACACAGACAAGAGAGAAGAATCCTAAGTCAATAAAG
AGAGCAGATCTTCAACACTGTTGAAGAAAACTCTCCAAAACTAAGGAAAG
ACACATCCACACAGATACAAGATACACAGAACACCAAGTAGACAAGGACA
GAAGACAAAATAGCCATAGCTCATCATACTTAAACTACTATACGTATACA
TAATAAACAAACAAACAAACAAACAAACAAACAAAAACACATTTTGAAAA
CTTCAAGAGATGAAACGCAAGATGTGTATAAAGGGAAATCCAGCAGAGCA
ACAGCTGATTCCTCAATGGAAACTTTGAAAGCCTGGAACAATGCATTCCA
AGTACTAAAAACCATGATGGCATCCTATAATATTATACCCAGCAAAAC
TTCAATGACAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCCAGAAATTCTCTCAAAGAGCTCTCGGCCTCTCCC
TTTCCTCATACACCATACACTACCTGCTCCCTGCTGGCAGTCAGCACAAG
TTCCTTTCTGGAAGCTGGGGGTGGGGGTGGGGGTCGAAAAAAAAANCNNN
AACCATTCCATTTCCCTCCCCTTACTCTCCTCTTNTTATTTTTTTATTTT
TCCACCTCTTTTTCATCCTTCACTCCTACCCCCTTCTTTAAATAATCACC
CCTCTACCATCCCCACTCCACCCCCTTTTTTTTTAAAAAAACACAACCAC
CATTTACACCTCTATCTTTATTCCCCCCCCCCCCCCCCCTTCTTTCCCAT
TCTTCTTATTTCTACCTCTTACTTCCTCCCCCCCCATATCACAAACTAAT
ACATACAACCTCCTTATTTTTCCTTTTACTCATTCTTTCTTTCTCTCAAT
TTCACCCCCTCTCTCACCTCCCTTCTTCACTTCACCCCCCTACCATATAC
ATCTTATCTCACAAAATACATATTCTATCATCTCCTTCCCCTATTATCAT
TTTCTCTCCCCTTTCTTTTCACCCCAATCATACACTCACCCCCCCCCTAC
ACTACCCTTATTTTTACCTAAATATACCTTCCCCATATCAATTTTATTTA
AATCTTATAACACTTAAATCCACTCCAAACACCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_n07.g1 MSMg01no059_n07.g1 CHROMAT_FILE:
MSMg01no059_n07.g1 PHD_FILE: MSMg01no059_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:25 2005
         (114 letters)



>mm_chr17_48897959_48898472
          Length = 514

 Score =  219 bits (113), Expect = 6e-62
 Identities = 113/113 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctctcaaagagctctcggcctctccctttcctcatacaccatacactacctgctccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 attctctcaaagagctctcggcctctccctttcctcatacaccatacactacctgctccc 254

                                                                
Query: 61  tgctggcagtcagcacaagttcctttctggaagctgggggtgggggtgggggt 113
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tgctggcagtcagcacaagttcctttctggaagctgggggtgggggtgggggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 514
Length adjustment: 8
Effective length of query: 106
Effective length of database: 506
Effective search space:    53636
Effective search space used:    53636
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)