This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
Click to search
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BAC name
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search by nearby gene name.
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Search Result
BAC
Clone Name
MSMg01-060I13
Chromosome
17 (Build37)
Map Location
62,422,675 - 62,422,902
singlet/doublet
singlet
Overlap gene
none
Upstream gene
LOC433129
,
EG620725
,
LOC100043560
Downstream gene
Efna5
,
Fbxl17
Link
Open Mouse BAC browser
Click to get alignment info.
name
LOC433129
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:433129
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 2 Proteins
pseudo
: _no_value
name
EG620725
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:620725
MGI:3647626
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins
pseudo
: _no_value
name
LOC100043560
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100043560
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 85 mRNAs, 1467 ESTs, 27 Proteins
pseudo
: _no_value
name
Efna5
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:13640
MGI:107444
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs
name
Fbxl17
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:50758
MGI:1354704
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 65 ESTs, 5 Proteins
name
Efna5
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:46560568
GeneID:13640
MGI:107444
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: ephrin A5
transcript_id
: NM_010109.2
name
Efna5
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:46560569
GeneID:13640
MGI:107444
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: ephrin A5
transcript_id
: NM_207654.1
name
Fbxl17
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:149268887
GeneID:50758
MGI:1354704
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 65 ESTs, 5 Proteins
product
: F-box and leucine-rich repeat protein 17, transcript variant 3
transcript_id
: XM_925135.3
name
Efna5
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6753724
CCDS:CCDS28934.1
GeneID:13640
MGI:107444
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0045499 - chemorepellant activity [Evidence IDA]; GO:0048503 - GPI anchor binding [Evidence IEA]
GO_process
: GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007399 - nervous system development [Evidence IEA]; GO:0031290 - retinal ganglion cell axon guidance [Evidence IDA]
codon_start
: 1
note
: isoform 2 is encoded by transcript variant 2
product
: ephrin A5 isoform 2
protein_id
: NP_034239.1
name
Efna5
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:46560570
CCDS:CCDS28935.1
GeneID:13640
MGI:107444
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0045499 - chemorepellant activity [Evidence IDA]; GO:0048503 - GPI anchor binding [Evidence IEA]
GO_process
: GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007399 - nervous system development [Evidence IEA]; GO:0031290 - retinal ganglion cell axon guidance [Evidence IDA]
codon_start
: 1
note
: isoform 1 is encoded by transcript variant 1
product
: ephrin A5 isoform 1
protein_id
: NP_997537.1
name
Fbxl17
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:94402100
GeneID:50758
MGI:1354704
definition
codon_start
: 1
product
: F-box and leucine-rich repeat protein 17 isoform 3
protein_id
: XP_930228.2
name
EG620725
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:620725
definition
number
: 1
pseudo
: _no_value
name
LOC433129
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149268778
GeneID:433129
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 2 Proteins
product
: similar to Obox6 protein
pseudo
: _no_value
transcript_id
: XR_034674.1
name
LOC100043560
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149268779
GeneID:100043560
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 85 mRNAs, 1467 ESTs, 27 Proteins
product
: similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
pseudo
: _no_value
transcript_id
: XR_034681.1
clone name
MSMg01-428C17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-236I05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-320H12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-357G13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-108J13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-289P19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-515D22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-517F10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-135K08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-160E02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-477G10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-315O06
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-545I16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-173H19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-469I05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-378F15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-440I20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-190G03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-535J01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-475I22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-262J08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-397P18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-181L23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-486L09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-104K08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-192H20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-523L07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-405M16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-269F12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-066B19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-268J24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-313G03
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-372D15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-434C05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-306M15
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-536H05
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-157B21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-183P15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-519K05
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-309M13
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-545D09
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-060I13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-410I14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-419J24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-452I03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-493O20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-161F19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-519C07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-486J03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-204B23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-531N02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-267B15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-372D15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-514M10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-120M13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-120L14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-165K13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-464L15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-130K02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-308I23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-405D17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-537N12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-175A24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-517I11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-177O11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-495P01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-414K08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-443F01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-092E16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-366F22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-480E05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-401I21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-099P21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-349J10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-268E19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-535E12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-516L22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-136M13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-311L24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-323M11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-213O10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-091G19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-540H23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-175E01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-135D03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-331I20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-542M09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-475P04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-112D06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-354F07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-084O22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-328N20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-408C01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-235P20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-445G01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-419M17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-062H02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-152E18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-266P14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-294F13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-479G07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-390K15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-531B01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-076J13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-079A04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-107A11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-325G09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-466N14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-338J12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-471B23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-197N06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-210N03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-300E02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-342N15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-544C09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-087L17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-354N18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-425N22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-142O13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-167M18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-112C11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-326O23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-232G18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-280B22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-136K02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-095G08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-027E05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-155D12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-008E21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-140N04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-318F20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-232D21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-153O23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-281I04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-054N04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-057G19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-240A14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-033D07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-106E05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-124P17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-316A07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-265J18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-151H02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-128B11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-329N08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-166M09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-082C15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-162H02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-337D05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-329K06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-305O14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-126C07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-290N02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-329K06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-219P15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-095I08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-305O14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-083E10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-183F09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-044I11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-350L22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-270H21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-282A13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-342D06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-335J05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-134K16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-318H15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-183C09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-090I05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-131M04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-249M21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-036H20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-143C09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-174K06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-161F10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-090N03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-023B18
singlet/doublet
doublet
plural/unique
unique
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B6Ng01-167O23
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B6Ng01-020E23
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doublet
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B6Ng01-162J15
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singlet
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B6Ng01-251E08
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doublet
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doublet
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doublet
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doublet
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doublet
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doublet
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B6Ng01-137B03
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doublet
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B6Ng01-006O22
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doublet
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doublet
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B6Ng01-347L18
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B6Ng01-263K06
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B6Ng01-300A16
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doublet
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B6Ng01-043L08
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B6Ng01-124P13
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B6Ng01-153E02
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B6Ng01-303G18
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B6Ng01-200F16
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B6Ng01-278M20
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B6Ng01-114F12
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