BAC Information

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BAC

Clone NameMSMg01-060I13
Chromosome17 (Build37)
Map Location 62,422,675 - 62,422,902
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433129, EG620725, LOC100043560
Downstream geneEfna5, Fbxl17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060I13.T7 (MSMg01no060_i13.b1)MSMg01-060I13.TJ (MSMg01no060_i13.g1)
ACCAG286955AG286956
length712791
length of high quality
(start - end)
364 (46 - 409)226 (74 - 299)
definitionCHROMAT_FILE: MSMg01no060_i13.b1 PHD_FILE: MSMg01no060_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:17 2005CHROMAT_FILE: MSMg01no060_i13.g1 PHD_FILE: MSMg01no060_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGCACTCAAACCATCTGGCCTGTGAGGTTTTTGTTTGTTTGTTTG
GTTGTTTCTATGGGTAGGAGACTTTTAATGATTCCTTGCATATTGTTAGG
ATTAGATGACTATCAAGCTATGAAGATAGTTTATCTGATATTGATTTACC
TTTGCTAACTGATATCTATTTAGAAAAATCATCCATTCCATTTAGATTTT
CCAATTTTACGGAGTACAGACTTGAAATAAGCCATAATGATTCTTTGGAT
TCTCTCAGTGACTGTTGTTTTATCCCTCTTTTCATTTCTAATGTTAATTT
GGGTACTGTCTCTGCCTTTTCGTTAGTTTGGTTAAAGGTTTGTTAATCTT
CTTGACCCCCCCCCACAACCAGGTATTGGTTTCATTGATCCTTTGTATTG
TTCTCTTTGTTTCTAATTTTTTATTTCAGCCTTAAGTTTGATTATTTCCT
GTCATCTACTCCTGCTTGTTGTGCTCGCTGCTGTGTTTGTTGCTGTGCTT
CTTCTCCTTTTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTACTATATC
ATCCATTTTTTTCTTCTTTCTTTTTCTTTCCCCCCTTCTTTTTTTTTCCT
CCTTCCTCGTTCTTCACTCCTCCTCCATTTTTTTTTTTTTTTCTTTTTTC
TCATCTTCCTTG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTCTCTTCTTAAGACTGTTGGATATTA
TTCATGATTATATTGTTTAAGAGGCTTATTAATTGATTTTAAATGTTAAG
TGATGAACTACTAATAAAAGAGGAGAAAATGACTAATCAACATTTTGGAA
AATGATTTTTCTGGTGCGTGCATGCACGTGTGTGCGTGTGCGTGTGCGTG
TGCATGTGCATGTGCGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGCCTTTTTTTTTTTTCTCCCCTACTTCACACAAACACTCTTTTTTTCTT
CTTTTCTCTTCCTTTCTCTCTTCTCCTCCTTTCTTATTCCTTTTTTTTTA
TTTATTTGTTTTCCCCCCCCCCCTTTTTTATATTCCTCTTTTTTTTCTTA
TTTTTCCCCTTCCTCCATTTAATCTCCTTTCTACTTTTTTTTTATTTTCC
ATACAACCTTTTGTTTTATCCCTTTTTCATCCCCCCTCCCTCCTCCCTTT
GTTCTCTTTTTTCTCCACCTCTCCCTTTTTTTTCCATCCCATTTCCTTCA
CTTTCTTTTTTTATTATATTTTTCTTGACCACTATTTCTTCTTTAATTCG
GCGTTTTTTTTTCTTTCTTCTTTTTTTCATTCTCTCCAATCATCATATAT
ATTTTCTTATATTTCCATCTTTTTCTTTGTCTCATTTCTCCTCTGCTTCC
CTCTCCATTTTCCTTTTTATTTCTTTTATTTTTTCTTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_i13.g1 MSMg01no060_i13.g1 CHROMAT_FILE:
MSMg01no060_i13.g1 PHD_FILE: MSMg01no060_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:17 2005
         (226 letters)



>mm_chr17_62422549_62423174
          Length = 626

 Score =  383 bits (198), Expect = e-111
 Identities = 220/232 (94%), Gaps = 10/232 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctcttcttaagactgttggatattattcatgattatattgtttaagaggcttattaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ttctcttcttaagactgttggatattattcatgattatattgtttaagaggcttattaat 295

                                                                       
Query: 61  tgattttaaatgttaagtgatgaactactaataaaagaggagaaaatgactaatcaacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tgattttaaatgttaagtgatgaactactaataaaagaggagaaaatgactaatcaacat 235

                                                                       
Query: 121 tttggaaaatgatttttctggtgcgtgcatgcacgtgtgtgcgtgtgcgtgtgc------ 174
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||      
Sbjct: 234 tttggaaaatgatttttctggtgcatgcatgcacgtgtgtgcgtgtgcgtgtgcatgcgt 175

                                                               
Query: 175 gtgtgcatgtgcatgtgcgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgt 226
           |||||  ||||  |||||||||| ||||||||||||||||||||||||||||
Sbjct: 174 gtgtg--tgtg--tgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 127


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 9
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)