BAC Information

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BAC

Clone NameMSMg01-062K04
Chromosome17 (Build37)
Map Location 77,600,962 - 77,763,328
singlet/doubletdoublet
Overlap geneLOC545234
Upstream geneLOC100043886, EG624348
Downstream geneLOC100043887, LOC668795, LOC383275, Crim1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062K04.T7 (MSMg01no062_k04.b1)MSMg01-062K04.TJ (MSMg01no062_k04.g1)
ACCAG288564AG288565
length1,1981,138
length of high quality
(start - end)		718 (91 - 808)670 (87 - 756)
definitionCHROMAT_FILE: MSMg01no062_k04.b1 PHD_FILE: MSMg01no062_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:26 2005CHROMAT_FILE: MSMg01no062_k04.g1 PHD_FILE: MSMg01no062_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,762,823 - 77,763,328)(77,600,962 - 77,601,631)
sequence
NCCGTTTCATTTNNNNAGCAATGGGCGCTAXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCTAACATTCTCTAAACTGTATAAGAGCTAAGATGGA
GACAGACCAAAAGAAGAGTCCTTGCTGGTAATTACAACCGCAATGGGCTT
TACTTGTTCATCGCATTTAGTTGACAGTTATTTGTTATTTAATTTCAGAT
AAGGAACCAAGCAGAAGGTGTCTGAAGCAAGAGCCTTGCACCAGGGATGA
AGCCTAGCACACTGCTTATACATGTAGACTAGAGACAAGTAGCAATGCTT
TTTAAGGAAAATAGTTCAAAGAAAACATTGTTATTGACAAATCTATTACA
CTCATTTAACACCCTGCTATGTCAGCTCCATGCACACTTTTTCCCACGGC
TAAAGGTGTCTGGAGACAACCATGATGATCGGTCTCATTTTGAACTTCTG
AGCTCAATCTTGAAGTGGTGGTAGAAATACTTCCTGTATTTTCCCAAATC
ATTCATTCTGATATCTTAGGTGGTTTATACCTTCTAGTCATTACCCCCAA
GCAATCTCCATTAATATAACAAGACTTGGGCAACAGAAATACAAGAAACT
CCATTAAATTTGAACAACTTCCCAAAGTTTTTTGCATGTGCACATTGAGA
TGGAAAAGGAGGATTATTTAGGGCATATTTAGACATAGAATCAGTTATCT
AAGTGAAATGAGTATGAGAATTATACACTTTTGTATTGTATTATATTCTT
TCTAATTGGTGTCTCATAAATAGTTAACTGGATTTCCGTGCTACCCAGGT
ACGGGCCCATAAGGCATTGCTCTTGATTCCCATTGTAACTTAAAGGGAAA
CTTAACACAATGTCCAAAAGCCCTTGAACTCCTTAATATGAAGAAGGATG
TCCTCCAATTCCCTTGCTTGCGGAACCCACTTAAGGGGCACCCAACTTTA
TTTTTCAAATGGAACATGTACATCTTACAAAAGGAAAAATGGAAGGAATC
TTCCTTTAAAAGGGGCAAAAAAGAACCTGGGGAAAAACCTGTTTGTTCCC
ACTTTTTAATTTATTTTTGCCCTTTGTAAAATCCCGGTTTTAACGTCATC
TGCTATTTTTTTTTTCCAAACAATCTGTTTTACAAAAATTGTGGTCTTAA
AATTTTTCCTTTCCCACATATCACCCCCCTCTTTTTCTTATCTCTTTA

NCCTTTCTTTTTTNTTACCATGGAXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTATTCAACCTCCTTGCCTA
CAGTGATATTTTATTTCCCCCTTCTCTAGTATGGAAAGGAGGACCTCACT
GACAGAAAATAAGAGAGAGAAGGTAGAGAATAAAGAAAGAAGAAGTTACT
AAATGTCCAAGTCTATTTTCTGTTTCTGGAAGTGAATATTAGAGGTCAGT
TGACTTATAAAGAAAAGGGCTTTATTTATCTCACAGGTTTGAAAGTTCAT
ATCACAGACATTTGTTGAGCATGTGGTAAAGGCCTTTCTGCAGAGTCTTA
CCACAGCACAGGCACACTGTAAGGCAAAACAAGCTTGCTAGCTTCGTTTT
TTATCTCACATCGTAAAAAGCCACGAATGTATGAAGTTCCCACCTCATGA
CCTCACCTAATCCTAATTACCTCCCAAAGGCCTCACTTTCAAAATACCAT
AAATCTAAAGACTTTGGAGATTAAATTTCAACATGACTTTTGCAGTGAAA
AAAATACTCCAACTAATGTATTTCTCCCTTGATCCCCTAAACTCAAATCA
AATAAAAATTTTATCTCAAGGCATCAACTCAATATTCCAAAGCCCAGAAT
TAAATATTAAATGCCATTGAGATATGAGGCACACCTGGGGCTAAAACTCC
AGCTATGGACCTCTGAAATTATGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTCTTTTTTTTTTTTTTTTTTCTTTTTTTTTTCTTCTTTTCTCTC
TTTCTTTTCTTTTTTTTTTCTTTTTCTCTCTTTTTTTCTTTTCTTTTTTT
TTTTTTTCTTTTTTCTTCTTTTCTTTCTCTTTTTTTTTTTCCTTTCTCCT
TTTCTTTTCTTTTTTTTTTTTTCTTTTCCTTTTTTCCTCTTTGCTTTTTT
TCTTCTCTTTTTTCCTTCTCTTTTTTTTTTTTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_k04.b1 MSMg01no062_k04.b1 CHROMAT_FILE:
MSMg01no062_k04.b1 PHD_FILE: MSMg01no062_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:26 2005
         (718 letters)



>mm_chr17_77762823_77763940
          Length = 1118

 Score =  955 bits (494), Expect = 0.0
 Identities = 503/506 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaagatggagacagaccaaaagaagagtccttgctggtaattacaaccgcaatgggctt 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 506 ctaagatggagacagaccaaaagaagagtccttgctggtaattacaattgcaatgggctt 447

                                                                       
Query: 61  tacttgttcatcgcatttagttgacagttatttgttatttaatttcagataaggaaccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tacttgttcatcgcatttagttgacagttatttgttatttaatttcagataaggaaccaa 387

                                                                       
Query: 121 gcagaaggtgtctgaagcaagagccttgcaccagggatgaagcctagcacactgcttata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gcagaaggtgtctgaagcaagagccttgcaccagggatgaagcctagcacactgcttata 327

                                                                       
Query: 181 catgtagactagagacaagtagcaatgctttttaaggaaaatagttcaaagaaaacattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 catgtagactagagacaagtagcaatgctttttaaggaaaatagttcaaagaaaacattg 267

                                                                       
Query: 241 ttattgacaaatctattacactcatttaacaccctgctatgtcagctccatgcacacttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttattgacaaatctattacactcatttaacaccctgctatgtcagctccatgcacacttt 207

                                                                       
Query: 301 ttcccacggctaaaggtgtctggagacaaccatgatgatcggtctcattttgaacttctg 360
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ttcccatggctaaaggtgtctggagacaaccatgatgatcggtctcattttgaacttctg 147

                                                                       
Query: 361 agctcaatcttgaagtggtggtagaaatacttcctgtattttcccaaatcattcattctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 agctcaatcttgaagtggtggtagaaatacttcctgtattttcccaaatcattcattctg 87

                                                                       
Query: 421 atatcttaggtggtttataccttctagtcattacccccaagcaatctccattaatataac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  atatcttaggtggtttataccttctagtcattacccccaagcaatctccattaatataac 27

                                     
Query: 481 aagacttgggcaacagaaatacaaga 506
           ||||||||||||||||||||||||||
Sbjct: 26  aagacttgggcaacagaaatacaaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 718
Length of database: 1118
Length adjustment: 10
Effective length of query: 708
Effective length of database: 1108
Effective search space:   784464
Effective search space used:   784464
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no062_k04.g1 MSMg01no062_k04.g1 CHROMAT_FILE:
MSMg01no062_k04.g1 PHD_FILE: MSMg01no062_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:26 2005
         (670 letters)



>mm_chr17_77600762_77601831
          Length = 1070

 Score = 1272 bits (658), Expect = 0.0
 Identities = 667/670 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacctccttgcctacagtgatattttatttcccccttctctagtatggaaaggaggacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacctccttgcctacagtgatattttatttcccccttctctagtatggaaaggaggacct 260

                                                                       
Query: 61  cactgacagaaaataagagagagaaggtagagaataaagaaagaagaagttactaaatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cactgacagaaaataagagagagaaggtagagaataaagaaagaagaagttactaaatgt 320

                                                                       
Query: 121 ccaagtctattttctgtttctggaagtgaatattagaggtcagttgacttataaagaaaa 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 ccaagtctattttctgtttctggaagtgaatattagaggtcggttgacttataaagaaaa 380

                                                                       
Query: 181 gggctttatttatctcacaggtttgaaagttcatatcacagacatttgttgagcatgtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggctttatttatctcacaggtttgaaagttcatatcacagacatttgttgagcatgtgg 440

                                                                       
Query: 241 taaaggcctttctgcagagtcttaccacagcacaggcacactgtaaggcaaaacaagctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaaggcctttctgcagagtcttaccacagcacaggcacactgtaaggcaaaacaagctt 500

                                                                       
Query: 301 gctagcttcgttttttatctcacatcgtaaaaagccacgaatgtatgaagttcccacctc 360
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctagcttcgttttctatctcacatcgtaaaaagccacgaatgtatgaagttcccacctc 560

                                                                       
Query: 361 atgacctcacctaatcctaattacctcccaaaggcctcactttcaaaataccataaatct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgacctcacctaatcctaattacctcccaaaggcctcactttcaaaataccataaatct 620

                                                                       
Query: 421 aaagactttggagattaaatttcaacatgacttttgcagtgaaaaaaatactccaactaa 480
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaagactttggagattaaattttaacatgacttttgcagtgaaaaaaatactccaactaa 680

                                                                       
Query: 481 tgtatttctcccttgatcccctaaactcaaatcaaataaaaattttatctcaaggcatca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtatttctcccttgatcccctaaactcaaatcaaataaaaattttatctcaaggcatca 740

                                                                       
Query: 541 actcaatattccaaagcccagaattaaatattaaatgccattgagatatgaggcacacct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 actcaatattccaaagcccagaattaaatattaaatgccattgagatatgaggcacacct 800

                                                                       
Query: 601 ggggctaaaactccagctatggacctctgaaattatgtgtgtgtgtgtgtgtgtgtgtgt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggggctaaaactccagctatggacctctgaaattatgtgtgtgtgtgtgtgtgtgtgtgt 860

                     
Query: 661 gtgtgtgtgt 670
           ||||||||||
Sbjct: 861 gtgtgtgtgt 870


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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