BAC Information

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BAC

Clone NameMSMg01-063E20
Chromosome17 (Build37)
Map Location 33,024,802 - 33,025,160
singlet/doubletsinglet
Overlap geneBC066107
Upstream geneHsf2bp, Rrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l, Wiz, A430107D22Rik, Pglyrp2, 4732474A20Rik, EG208285, Cyp4f16, LOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266
Downstream geneCyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063E20.T7 (MSMg01no063_e20.b1)MSMg01-063E20.TJ (MSMg01no063_e20.g1)
ACCAG289074AG289075
length752872
length of high quality
(start - end)
365 (112 - 476)142 (156 - 297)
definitionCHROMAT_FILE: MSMg01no063_e20.b1 PHD_FILE: MSMg01no063_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:36 2005CHROMAT_FILE: MSMg01no063_e20.g1 PHD_FILE: MSMg01no063_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNTTTTTTTTNNTTTTTTTTTCTNTTTTNNNCCTCTTTTTTTTT
CTTCCCCCTTTCCTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCGCGGAATTCTACTATTTCCTTAAACAAAGGGACAGATG
ACATATGTCTTTAGACAGAGCTCTAGTTCACCAACATGTCACCTCTATAA
TTTCTAAAGCACACATTAAAGTAAAATTCTTCGGAAGGGCAGTGGTTGTA
CACACATTGAATCCCAACCCTCAGAGGCAGAGGCAGAGTAGTCTGTGAGC
TTGAGGCCAATCTGGCCTACAGTGCAAGTTTCAGGACAGCCAAGGCCACA
CAGAGAAACCCTGTCTTGGAAAAAAATAAACAAATACTTGACCAAATTTA
TTACCTGCAAATGAATGTCTATAATAAATGTCTACAACCATTCCCCTACC
CAGGCACTGTGCTCCCTGCTAGAAGTCACAGGCTGTCAAAGCCCATGCCA
GAAGCTGTTGGCCAGGAGTGTCCCAAAGGCATCCCCACCCCATAAAACCT
TGGCACTGCTCTCACAATTGCCCTCGCATGCCTAAAGAAAACCATGCTTT
GTCCGTTTGTTTGTCTGGCTAAAGCTTATCGAAAGTCTTTTCTGACCCCA
AAAGATCACTTCCGTGCAAGCTACCTCGTAACATGCGCGCCGGTACATGT
ATTGGACTACCGCCCGCTAATTTAGAATACTCCCTGGTCATATAACCCGT
AG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCCCCCCCCCCCCCCATCCCNANCAAACTATGATAGTXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCAGGCTAGAGATTATTGATTCCCTTGAATAGTGCTTTCAGTCAAG
AGTTAAAAAAAAAAAAAAAAAAAAAAAAACCTACCTATTAGTTCTTACAA
AAAGGGAGGACTCTCTGGTGATATCCTTGCCAAGAATTTCCTTCCTCGAA
TATGCGAATGGGTGTTTCCCTGCGTTCTCAACCTAATTCTGTCTGAGCAC
AGGACTGAGGCTGTTTGTACGCAGGCACCTCAGCTAAAGGTCTGAAGTGC
TCATGCTGCAAATGTCTCAATGAGAATTACCTTTAAATCCATGCCTTCAG
CTCTGTTGTTAAACTACTCGCCTCGCAACAACTGCTCAAAAGCCATGATA
GGGCTATATTAATAGGGCGTAGCTGATTGGTAAATAAGGAAACCACTTCG
CATAATGTGTGCTCAAACCTTAGTCGCCACTTTGGTATGGTGTTTTCTCT
TGATTTTCTTATAAAGTTTCATGTGCGGCAACTCAAATAAGCGATTCTAA
CAAACATTTAATTGCCTACTATATTAAATACATACCTCCGTGATCTATAT
TTGTAATTACGGGCAGTGAAAAATAATATTTTTCTTGCATATATGCGCTG
GTACGATAATTATCCATAACATAATGGCATTTAATATATTAAAAAAGGAC
ATATGATAATAAAAATTATAAAAGAAAAAACATTATATATTTGTGTTACA
CCTCCATATTAAAATGTGTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_e20.b1 MSMg01no063_e20.b1 CHROMAT_FILE:
MSMg01no063_e20.b1 PHD_FILE: MSMg01no063_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:36 2005
         (365 letters)



>mm_chr17_33024598_33025361
          Length = 764

 Score =  611 bits (316), Expect = e-179
 Identities = 349/360 (96%), Gaps = 1/360 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctactatttccttaaacaaagggacagatgacatatgtctttagacagagctcta 64
           |||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctactaaatcattaaacaaagggacagatgacatatgtctttagacagagctcta 264

                                                                       
Query: 65  gttcaccaacatgtcacctctataatttctaaagcacacattaaagtaaaattcttcgga 124
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 265 attcaccaacatgtcacctctataattcctaaagcacacattaaagtaaaattctt-gga 323

                                                                       
Query: 125 agggcagtggttgtacacacattgaatcccaaccctcagaggcagaggcagagtagtctg 184
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 324 agggcagtggttgtacacacattgaatcccaaccctcggaggcagaggcagagtagtctg 383

                                                                       
Query: 185 tgagcttgaggccaatctggcctacagtgcaagtttcaggacagccaaggccacacagag 244
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 384 tgagcttgaggccaatctggcctacagtacaagtttcaggacagccaaggccacacagag 443

                                                                       
Query: 245 aaaccctgtcttggaaaaaaataaacaaatacttgaccaaatttattacctgcaaatgaa 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 444 aaaccctgtcttggaaaaaaataaacaaataattgaccaaatttattacctgcaaatgaa 503

                                                                       
Query: 305 tgtctataataaatgtctacaaccattcccctacccaggcactgtgctccctgctagaag 364
           ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 504 tgtctataataaacgtctacaaccagtcccctacccaggcactgtgctccctgctagaag 563


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 764
Length adjustment: 9
Effective length of query: 356
Effective length of database: 755
Effective search space:   268780
Effective search space used:   268780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)