Query= MSMg01no066_a23.b1 MSMg01no066_a23.b1 CHROMAT_FILE:
MSMg01no066_a23.b1 PHD_FILE: MSMg01no066_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:44 2005
(509 letters)
>mm_chr17_69341345_69342255
Length = 911
Score = 793 bits (410), Expect = 0.0
Identities = 474/508 (93%), Gaps = 24/508 (4%)
Strand = Plus / Minus
Query: 6 gaattctattgttc--ttctttttttaatgtttgcagttttacagaaagcataggcttaa 63
|||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 496 gaattctattgttcttttttttttttaatgtttgcagttttacagaaagcacaggcttaa 437
Query: 64 agataaacaggtatgatgacctatttctttatggcagtccggaccattccatcaattcct 123
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 agataaacaggtatgacgacctatttctttatggcagtccggaccattccatcaattcct 377
Query: 124 gtctagctctgggaaatctgaaatacctatttttgtgaaacctccatctgtatcctaaca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gtctagctctgggaaatctgaaatacctatttttgtgaaacctccatctgtatcctaaca 317
Query: 184 acttacgtttagtgtccccatttctcaccctggggctctgatgacaactgcattcagagc 243
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 acttatgtttagtgtccccatttctcaccctggggctctgatgacaactgcattcagagc 257
Query: 244 cagcctgatgtcagctggtgtcagatgcccccacagaagtaaaattggcaaaaacaaaca 303
|| ||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct: 256 catcctgatgtcagctggtgtcagatacccccacacaactaaaattggcaaaa------- 204
Query: 304 aacaaacaaacaaacaaacaaaaaaccctcaaccccagtaaacttctgttgcagaaaaaa 363
||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 203 ----------caaacaaacaaaa--ccctcaatcccagtaaacttctgttgcagaaaaaa 156
Query: 364 aaaa--gcctcctcctggactaagcaaatattttggaagatgctttgtattgagataaat 421
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aaaaaagcctcctcctggactaagcaaatattttggaagatgctttgtattgagataaat 96
Query: 422 tgaagtttcttcttagaaaattaattttgagatataaaaaaataatatttgaccgaagtt 481
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 95 tgaagtttcttcttagaaaattaattttgagatataaaata-taatatttgaccgaagtt 37
Query: 482 atgattctctgggaaggagttaagaatt 509
||||||||||||||||||||||||||||
Sbjct: 36 atgattctctgggaaggagttaagaatt 9
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 911
Length adjustment: 10
Effective length of query: 499
Effective length of database: 901
Effective search space: 449599
Effective search space used: 449599
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no066_a23.g1 MSMg01no066_a23.g1 CHROMAT_FILE:
MSMg01no066_a23.g1 PHD_FILE: MSMg01no066_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:44 2005
(368 letters)
>mm_chr17_69184457_69185224
Length = 768
Score = 696 bits (360), Expect = 0.0
Identities = 366/368 (99%)
Strand = Plus / Plus
Query: 1 ctgtgtgtatgtagccctgtaggacagagagtaggatttgccatttggtcccttggcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtgtgtatgtagccctgtaggacagagagtaggatttgccatttggtcccttggcaga 260
Query: 61 cagctctgtaatgaaatgaggcttcgggtccagcctttgtacaaaacaccagatagttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagctctgtaatgaaatgaggcttcgggtccagcctttgtacaaaacaccagatagttat 320
Query: 121 cagggatttaagaaatgcagggattctgagccaaaagggttttaacaaaccactgaagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagggatttaagaaatgcagggattctgagccaaaagggttttaacaaaccactgaagga 380
Query: 181 gttgggttacttttcctttgcaatgatttccgtaaaaggagaagttccattgtggggcgg 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 gttgggttacttttcctttgcaatgatttccgtaaaaggagacgttccattgtggggcgg 440
Query: 241 gaagggtttcctctgctgccttttgttttctaacatttgacagctgagctaagataaggg 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaagggtttcctctgcagccttttgttttctaacatttgacagctgagctaagataaggg 500
Query: 301 gaaggagttcaggttgaaacttcaatcagaggccacctttcaaacatgcaggtgatggcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaggagttcaggttgaaacttcaatcagaggccacctttcaaacatgcaggtgatggcc 560
Query: 361 acctttag 368
||||||||
Sbjct: 561 acctttag 568
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space: 272481
Effective search space used: 272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
