BAC Information

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BAC

Clone NameMSMg01-066E14
Chromosome17 (Build37)
Map Location 26,582,358 - 26,582,669
singlet/doubletsinglet
Overlap geneC230078M08Rik
Upstream geneTekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055
Downstream geneDusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066E14.T7 (MSMg01no066_e14.b1)MSMg01-066E14.TJ (MSMg01no066_e14.g1)
ACCAG291294AG291295
length7241,791
length of high quality
(start - end)
316 (40 - 355)---
definitionCHROMAT_FILE: MSMg01no066_e14.b1 PHD_FILE: MSMg01no066_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:01 2005CHROMAT_FILE: MSMg01no066_e14.g1 PHD_FILE: MSMg01no066_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAAGGATCCGCGGAATTC
AGGGCTCTTGCGCATCCCCGTTCCAGTGCCTGGAAGTGGCAGGGAGTTTT
CTCCCCAGAGACTCCCTGTGGGTGGTCATTAACTGGTGGGATCTTGGCTG
TTTGGCAAGGGCTCACTCACCATAAAGAACACCCCTAAGGTGGGTGCAGA
AAGTATTGTGGGCATCTATTTAGATGGATCCAAGGCAATAGAATGGTCAA
GAAAGCCCACATGCTCCACCCTGTCTTGACCTGCTGAAGGTACCACTCAG
GCATCAGGGCTGGGTGCTTGCTCTCTGTTGCCCCTTATAGCAGCTGGCAT
CCTGATGGCACTCAGCAAATGTTTGTTGAGTGACTTTGTGCCCATATAGA
TACTGGATGCTATTTCACCAACCCCCTGACCACTCCTAACCTGGCTCCTG
GTCTGATCTGCAGTCTTTTACTGAGCACCTACTATGTGCTGGCACAAGCT
CCAACTCCAGAGTGATCAAATCAGTTTATGATCTGTCCTCTTGCCTGAGA
GCTGCCCACAGGCCTTGCCTTTTTGTCTCAGTCTTCAACCCCATGCTCCT
GATCATGGATCCATGCTTGGCCAATTGGACGCTTGAACAAGCTGAATATT
GTGTTGTCTCATTTCTGCTATAGGTTCTGCCTTGCCCATTATTTTCCCTC
CCCGTATTTAGTGACGAATCCTTG
TCACCGCCTTTTTTTTCTTTANTCTCTATCNTTCTCTCGTCTTNNNTTCT
CATCGCGTTTGTGCGTTGCGCCTCCTCTCCGCGCTTAGTCTGTCGTCTTN
GTGGTCCGCTGCCCGCGGTGACTGTGTGTGGCGGTNCGTACGCGTCGCTA
NCATTTATTATCTTCGCTTCATTCACATCGGCGTTTGTATTNCTCTTCAT
CCCGCGCTGCGTTATCCAAGGTGTAAATCTTCCGTCCGGTAGCTGCGCGT
TCTGTATATGTGTGATACGGCTGTATGTTTGCGCGCGACCCGCTGTGCTT
TCTCGTCCGGCCGCGTCGCGAGTCGTGATATAGTAGTACCCACCGGCGCA
CGTCGACACATATAGCCGTACATCTATCGCGAGATACTATTGAGAGTACT
GTATCGTATCTCGACTGCAGCGTGTTGTCGCGCGGCGCGTATGTGCGGCG
CGCGCTATANTTGTCACTATATTTACTTTCTCTCGGTCTGCCTGTATATA
TCGTCGTGCTCGTATATATNATAANCACGGACCAGCGTAGGTATACTAAC
GTAAACATCATCTATTTATCGCGCGATAATATTGCTGCTTATATGCGCGA
CATTANTATGGCGCGCGACTATTTGATTGCTACGCGCGCGCGCGCGCTGA
TATTAACTATGTGATAATGTGTAGACGCGTCGGCATAGATATCACTCGCG
ACATTATCGCGTGCGGCGTGTGTTGTGTGACGGCGCGTGTACTATAATTN
CGCTATTGCTAGTGCGATCTCGGTGGATATACGTGCGGTTCTGCAGTATA
TNCATGCTGCTTTCTATGCGCCGTNATATTCGACGCGCATATATAATACC
GGTTGAGTGCTCTAAACTANACGGGAATTATGTGCATCATACGAGTTCAT
CGTGCCAATCACCGCGGATGTGCAGTAGATATATATCGCACACTTGTGTG
TCAATCAGCGTGTGCGAGTATAATATCGGCTGTGCACGGGATATATGCGG
TCGAGTTGCCGGTATTAATATCGGCGTTGATCCCGGATCACGCGAGTGAT
TGACTATATTACTGTGTGTTGATAGAGAGCATACGACGTTGTATACGACG
CCGCGACTTATCAGCTATTAGCCCGCGATCGTATATTAACGCGTACGCAT
TAGTAGATGTGCTAGTACGGTATGTGTCCCATGTAATGTACTTGGTATGT
GCGCCGCTATTCGCGTGGTGGCGTGCATGTCTATGNCGTATAAGCGCAAC
ATTGGTACTCGCACGTGTATTACGCCCTCCGCGCGCGCATCGAGACTTGT
GTGTCGTGTAACATCACGAGCGTCTACGTGATCAGGTCTTGATGTATGCG
GCGGCGGCGTGTATATTATCGCGCACGATTCGTTCGTCCACCGCACACGT
ATTAGACACATATATATGTGTAGGATTGCGGGCGCGTGCGACGTACGGCG
CGGTGTGGTTTTATATAGCTCTACGTGGGCGAGACGGAGTCATATTACGT
GGTGCGTTCTTGAATACGAGTTATGACATATTGTATAATTATTCTGGTCG
GCGTCAGTGACTATATATTGCACGCCGCGCGTAATAATTCATGTGNCGAT
AATATNCGGTTCATCGGTGATCACATTATTACAGTTCATGACGGNGNACA
TTATATATGAGCATACAGACGNTACCTGTCACACATATTATTGTGATAGA
GAGCTCAGATANCATGCGCGTGAGTCGTCATGAGTGATACTGGCGGGACG
AGATGGCGCACGACGGNCTGTTATATCTATGATGGTACGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_e14.b1 MSMg01no066_e14.b1 CHROMAT_FILE:
MSMg01no066_e14.b1 PHD_FILE: MSMg01no066_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:01 2005
         (316 letters)



>mm_chr17_26582154_26582869
          Length = 716

 Score =  572 bits (296), Expect = e-168
 Identities = 308/312 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattcagggctcttgcgcatccccgttccagtgcctggaagtggcagggagttttctc 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 516 ggaattcagggctcttgtgcatccccgttccagtgcctggaagtggcagggagttttctg 457

                                                                       
Query: 65  cccagagactccctgtgggtggtcattaactggtgggatcttggctgtttggcaagggct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cccagagactccctgtgggtggtcattaactggtgggatcttggctgtttggcaagggct 397

                                                                       
Query: 125 cactcaccataaagaacacccctaaggtgggtgcagaaagtattgtgggcatctatttag 184
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 396 cactcaccataaagaacacccctaaggtaggtgcagaaagtattgtgggcatctatttag 337

                                                                       
Query: 185 atggatccaaggcaatagaatggtcaagaaagcccacatgctccaccctgtcttgacctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 336 atggatccaaggcaatagaatggtcaagaaagcccacatgctccaccctgtcttgccctg 277

                                                                       
Query: 245 ctgaaggtaccactcaggcatcagggctgggtgcttgctctctgttgccccttatagcag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ctgaaggtaccactcaggcatcagggctgggtgcttgctctctgttgccccttatagcag 217

                       
Query: 305 ctggcatcctga 316
           ||||||||||||
Sbjct: 216 ctggcatcctga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)