Query= MSMg01no067_d01.b1 MSMg01no067_d01.b1 CHROMAT_FILE:
MSMg01no067_d01.b1 PHD_FILE: MSMg01no067_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:13 2005
(315 letters)
>mm_chr17_20259184_20259898
Length = 715
Score = 207 bits (107), Expect = 7e-58
Identities = 264/323 (81%), Gaps = 24/323 (7%)
Strand = Plus / Minus
Query: 5 gaattcactgat----ataacattcccttaaattcactcactgccttcagaaagaaaagc 60
|||||||||||| | || ||| ||||||| ||||||||||||||||||||||||
Sbjct: 538 gaattcactgatgcaga-aaaatt---ttaaatttactcactgccttcagaaagaaaagt 483
Query: 61 tcatgagataagaaa-acattttatcataaacaag-aaaaaattaaagtctgaatttctt 118
||||||| |||| | |||||||||||||||| ||||||||||||||| || ||||
Sbjct: 482 tcatgag----gaaagatgttttatcataaacaagaaaaaaattaaagtcttaacttcta 427
Query: 119 tgtaactctctggtttcccaaccattttt---cataagtgtcttt-tttgatcctagg-a 173
|||| |||||||||||||| |||||||| |||||||| ||| | ||||||| || |
Sbjct: 426 cgtaaatctctggtttcccagccattttttaaaataagtgt-tttctctgatcct-ggaa 369
Query: 174 caatgggttttgattgtatttttagattacttttcctggtacagaatgtagttggaccat 233
||||| | ||||||| | || | | ||||||||||||||||||||||||||||||| |
Sbjct: 368 caatgagatttgattttcttctgaaattacttttcctggtacagaatgtagttggagtac 309
Query: 234 tggggcatg-ctattgttcttacagtctctgcttctatgtcctactattagccaagaatc 292
| ||| ||| | |||||||| |||| | ||| ||||||||||| || ||| | ||||||
Sbjct: 308 tagggaatgtc-attgttctggcagtttatgcctctatgtccta-tactagtcgagaatc 251
Query: 293 aaggcccactcatctcatactca 315
|||||||||| |||||||||||
Sbjct: 250 aaggcccacttgtctcatactca 228
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space: 216036
Effective search space used: 216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no067_d01.g1 MSMg01no067_d01.g1 CHROMAT_FILE:
MSMg01no067_d01.g1 PHD_FILE: MSMg01no067_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:13 2005
(516 letters)
>mm_chr17_20132292_20133206
Length = 915
Score = 420 bits (217), Expect = e-121
Identities = 452/559 (80%), Gaps = 59/559 (10%)
Strand = Plus / Plus
Query: 2 ttaaatgtggtgtgtgcttatatatttagagtatttgtttatttccataatagta-ggaa 60
|||||||||||||||| || || ||||||||| ||| || |||||||| |||| | ||||
Sbjct: 163 ttaaatgtggtgtgtgtttctagatttagagtttttattcatttccattatag-agggaa 221
Query: 61 gcataaaaagagtcagggatagatcacactggaacacaagttaaatgcttaaatcctgat 120
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 222 gcataaaaggagtcagggatagatcacattggaacacaagttaaatgcttaaatcctgat 281
Query: 121 ttgaaggcagaa--aca---------gaaa-------------------------aaaat 144
||||||||||| ||| |||| ||||
Sbjct: 282 ctgaaggcagaagcacaaaataaaacgaaacaaaacaaacaaacaaaaaacaaaaaaaaa 341
Query: 145 agaga-----tgtctcagggacttttttaaacctaaagctagcctctagcactatatctc 199
||||| ||||||||||||||||| || |||||||| |||| ||||||||| | |||
Sbjct: 342 agagaacagatgtctcagggacttttt-aatcctaaagccagcccctagcactacacctc 400
Query: 200 cccctaaaaagccaaaacctctaatctttcctaataggtttagtaaataaaat-aagtgt 258
||||||||| |||||||||||||| |||||||||| ||| ||||| |||||| || |||
Sbjct: 401 cccctaaaaggccaaaacctctaacctttcctaatgggtccagtaa-taaaatgaa-tgt 458
Query: 259 tctgtaaaactctaatccaagagaagccagatagttagcaagatcttcagtgtacagaag 318
||| ||||||| ||| ||||||||| ||||| |||||||||||| |||||||||||||||
Sbjct: 459 tctctaaaactataacccaagagaacccagaaagttagcaagatattcagtgtacagaag 518
Query: 319 actacaaaataatactattttctgaaagcagaaa--aattgttcccataattcataacac 376
|||||||||||||||| | ||||||| || ||| || |||||||||||||||||||||
Sbjct: 519 actacaaaataatactgtcttctgaa--cacaaagaaagtgttcccataattcataacac 576
Query: 377 acgacaaaatgtgttagatgcaggaaaacttaattcagacaaattt-cagcatacatatt 435
| ||||| || ||||||||||| |||| ||||| || || |||||| ||||||| |||||
Sbjct: 577 atgacaagatctgttagatgcatgaaa-cttaactctga-aaattttcagcatagatatt 634
Query: 436 gaaggtagtcatgaagacattccctttcccagaaaaaaaaataaggtaataggtattcat 495
||||||| ||||||||||| |||||| ||||||||| | ||||| ||| ||| ||
Sbjct: 635 gaaggtaatcatgaagacactcccttccccagaaaa-----ttaggtattagcaatttat 689
Query: 496 acatactggaaggtgaatc 514
|| |||||||||| |||||
Sbjct: 690 acctactggaaggggaatc 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 915
Length adjustment: 10
Effective length of query: 506
Effective length of database: 905
Effective search space: 457930
Effective search space used: 457930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
