BAC Information

Click to search

BAC

Clone NameMSMg01-068P10
Chromosome17 (Build37)
Map Location 66,675,487 - 66,675,716
singlet/doubletsinglet
Overlap genenone
Upstream geneE130009J12Rik, LOC668655, LOC674701, Vapa, Txndc2, Rab31, Ppp4r1, Ralbp1, LOC100043873, LOC100043592, Twsg1, Ankrd12, 5430411C19Rik, Ndufv2, ORF19, Ddx11, LOC100043599, LOC100043875
Downstream gene1110012J17Rik, LOC100043876, Rab12, 9130404H23Rik, Ptprm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068P10.T7 (MSMg01no068_p10.b1)MSMg01-068P10.TJ (MSMg01no068_p10.g1)
ACCAG293335AG293336
length724729
length of high quality
(start - end)
233 (130 - 362)230 (130 - 359)
definitionCHROMAT_FILE: MSMg01no068_p10.b1 PHD_FILE: MSMg01no068_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:34 2005CHROMAT_FILE: MSMg01no068_p10.g1 PHD_FILE: MSMg01no068_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGACCTCTCCATAATTCTAACATGAAGGGGTGTTGTATTTTTTC
AAATGCCTTTTCTGCATCTATGAACCCGATCATGCAATTTTTTTCTTTGA
ATTTGTTTATATAGTGGATTACGTTAATGGATTTTCATATATTAAGCCAG
CCTTGTATCCCTCGGATGAAGTCTACTTGATCGTGGTAAATGATGGTTTT
GATGTGTTCTTGGATTCGGTTTGCAAGAATTTTATTGAGTATTTTTGCAT
CAATATTCATAAGCAAGATTTGTCTGAAGTTCTCTTTTTTGGTTGGGTCC
TTGTGTGGCTTATTTTTTTTATTACCTCCGGCTCCCTAGAATGAGTTAGG
TAGTGTTCCTTCTGTTTCTATTTCATGGAATAGTATGAAAAAATTGGGAT
CAGGTCTTCTTTGAAAGTCTGGCAGAATTCTGCACTAAATCCATCTGGCC
CTGGTCTTTTTTTGGTTGGGAGGTTTTTTAATGACTTCTTCTATTTCTTT
GTGTGAAATAGACCTGTTTAGATAGTTTACCTGCTCTTGTATTAACTTTG
GTATGTGGCATCTGTCTAGAAAACCATCCATTTCATCCAGATTTTCTAGT
TTTGTTTATAATAAGCTTTTTTAGTACGATCTGGCTGACTTTTTGAACTT
TCTTCATTTCCTGTGTTATTGCTC
ACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGGGGCCCCCGCAGCCTTGCTGAGGC
AGAGTCTGTCCTGCAGGGTTCAGGCCCGGATGAGCTTGCAGAGTTGGTAC
GCCTCCCACCAGAGTTCTCAGAGGACACAGAGCGATTGGATTTCTGTCCA
GGAAATGTTTCCGATCTACTGGCCATGGAAGGGGCTGCTTCCACTTACTG
GCACTGCTGAGAACCTGAAGGAGGACAGTCCCAGAGCACAGCTAGTTAAC
TCAAGAGCTCAAAATAACACGTTGGGTTCATCTTCCCATGAGAACACTAC
GTCCTTAAAAGTCAATTCTTTTTCGAATTGCCTTCTTAGAGCCTCTAAAG
ATCTTGTCTAAAATTACCCTGACCCACTTAGGAGAGGAGTCAGAACCTAG
CAGATCGTTTTAGAAATGAAATTCAGTTCCCTGTAACAAGGACATCAGTG
GCCCATATAGTATCCTAGGACCAGTTTCAAGATTCATTCCATGTTACCTC
TTGTCCTTGAGATCATACCGGTCGTCCTAGTGCATCCCTGTTGTTTTAGG
CCAGGCCTTTAGCTTGGTGTCTCCTTGATCCTAGTTTCGCATGTGCAATG
CTTGCTGTTCGGGCATTCTTTGTTGCTTTTAACCACCTGGTGTAGGTTCT
GGTATTGGCGCATTCTTGTTGTTTATATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_p10.g1 MSMg01no068_p10.g1 CHROMAT_FILE:
MSMg01no068_p10.g1 PHD_FILE: MSMg01no068_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:34 2005
         (230 letters)



>mm_chr17_66675287_66675916
          Length = 630

 Score =  406 bits (210), Expect = e-118
 Identities = 225/230 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgagcttgcagagttggtacgcctcccaccagagttctcagaggacacagagcgattgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 atgagcttgcagagttggtacgcctcccaccagagttctcagaggacacagagcgattgg 371

                                                                       
Query: 61  atttctgtccaggaaatgtttccgatctactggccatggaaggggctgcttccacttact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 atttctgtccaggaaatgtttccgatctactggccatggaaggggctgcttccacttact 311

                                                                       
Query: 121 ggcactgctgagaacctgaaggaggacagtcccagagcacagctagttaactcaagagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ggcactgctgagaacctgaaggaggacagtcccagagcacagctagttaactcaagagct 251

                                                             
Query: 181 caaaataacacgttgggttcatcttcccatgagaacactacgtccttaaa 230
           |||||||||| ||||||  ||||||||| ||||||||||| |||||||||
Sbjct: 250 caaaataacatgttgggggcatcttcccgtgagaacactatgtccttaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)