BAC Information

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BAC

Clone NameMSMg01-069F07
Chromosome17 (Build37)
Map Location 4,186,946 - 4,355,843
singlet/doubletdoublet
Overlap genenone
Upstream geneRbm16, LOC624144, Tiam2, LOC630810, Tfb1m, Cldn20, 1700102H20Rik, Nox3, 4930470H14Rik
Downstream genePpia-ps17_26.1, Arid1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069F07.T7 (MSMg01no069_f07.b1)MSMg01-069F07.TJ (MSMg01no069_f07.g1)
ACCAG293613AG293614
length726704
length of high quality
(start - end)		300 (70 - 369)436 (72 - 507)
definitionCHROMAT_FILE: MSMg01no069_f07.b1 PHD_FILE: MSMg01no069_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:03 2005CHROMAT_FILE: MSMg01no069_f07.g1 PHD_FILE: MSMg01no069_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,186,946 - 4,187,238)(4,355,410 - 4,355,843)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGG
AATTCAGCTTCTGACCCTGGCCCGGACAAAGCCGGCTAGTCTGCCTGCTC
TGTAGAAATCGCTACAGGATCCCACGGTTTCCGTGGGCGTGTCCATGATC
AGAGCACTGTTGGCAATGGACTTCATCCCTCTGGGAAGAGCCAGCTTCGG
TCCTGACAAACAGAGAAGGGGGAACAAAGGCTTCTTCGCCCAATTTCCTT
GTCAACTTTTTTATTTGTGTATTTTTAAGTGTGTGTGTGCATGATTTGTG
ATTGTGTGAATGATTTGTGTCTATATGTATGAAAGTGTATATGATTTGTG
TGTATATGTGTGTGTGCACAACTTGCACATGTCCACGTGCGTATGTGTGG
ATTCCTTATGAGTCCCTACTGTGCGCTTGTTACGCGATTGCCCCGCTTTT
TGTGCTATCCCTGTCTGACCATTACTCTTCTCATCGCTCTCTACCCCATC
CCTATCTTTTCTCGCCCCCTCCCCCCCGTATAATTCGCACCAACCCCCTC
CTATAAAACCCCGTTTTCCCCGCCCCCCCTTATTTTTTCCCTTTACCCCT
TTCGCTGTTCGCCTCCCTTTTGCTCCCCTCTTTTTTCCCCCCCCCTTCCC
CCTCCTCCCTTTCTCCCCCCCCTTTTACCCCCCCCTCTTTCTTCGCCCGC
ATTGGTGTTGTCCCTCCCGCTCTTTG

AATGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGTAACAAACTTCTCTCCAACTGAATCT
GGCTGCAGAATTACTTTATAAGAGGAAATTTGGGCCTTATCCCCTGACTT
GATGCCCAGTGTTTGAAATATGCAAAGCAACGGCATGTGGTGGAGAACAC
AGTGTCCTTCCTGTGTACTGGGAAGAGGCTCCTTGCCCAAATTCTTAAAT
TTTGCTTTCATGGGGGAAGTGGCTGGCCAGCTTCTGTCCACCACTAAGGG
GAAATGATCACCATATTCATGTCATGCCTGAGAGCAGTCTCAGGGTGTCT
CAGCAGCCACTGTAAACAGATCAGCTTTCAATAGCATCCAGGCCATAGTC
CAGGGGGGCACTAACATACCTAGGACTTACAGGTACTGTTTTAGTTTCAT
CACTGTGATAAAATGTGCTGTCTACAAACAAGTTAAGGGGTAAATGGTTT
ATTTGCCTTATACAATGGCATCATAGTCCATGTATCCAGGGAAGTCATGT
AGGAGCTCATGGAGGAACCTGTAGTTAACACCTGACCCAGAGGTTTTTTC
AGGAATGCTGTTTACTTCCTTGATCCAGTGTCAAATTCAGCTCCTTTCCA
TGATCGCTCCAGAACTACCTGCTTAGGAATAGCTTCACTCTCAGTGTGCC
GCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_f07.b1 MSMg01no069_f07.b1 CHROMAT_FILE:
MSMg01no069_f07.b1 PHD_FILE: MSMg01no069_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:03 2005
         (300 letters)



>mm_chr17_4186742_4187441
          Length = 700

 Score =  559 bits (289), Expect = e-164
 Identities = 292/293 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggacaaagccggctagtctgcctgctctgtagaaatcgctacaggatcccacggtttccg 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggacaaagccggccagtctgcctgctctgtagaaatcgctacaggatcccacggtttccg 264

                                                                       
Query: 65  tgggcgtgtccatgatcagagcactgttggcaatggacttcatccctctgggaagagcca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgggcgtgtccatgatcagagcactgttggcaatggacttcatccctctgggaagagcca 324

                                                                       
Query: 125 gcttcggtcctgacaaacagagaagggggaacaaaggcttcttcgcccaatttccttgtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcttcggtcctgacaaacagagaagggggaacaaaggcttcttcgcccaatttccttgtc 384

                                                                       
Query: 185 aacttttttatttgtgtatttttaagtgtgtgtgtgcatgatttgtgattgtgtgaatga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aacttttttatttgtgtatttttaagtgtgtgtgtgcatgatttgtgattgtgtgaatga 444

                                                                
Query: 245 tttgtgtctatatgtatgaaagtgtatatgatttgtgtgtatatgtgtgtgtg 297
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttgtgtctatatgtatgaaagtgtatatgatttgtgtgtatatgtgtgtgtg 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no069_f07.g1 MSMg01no069_f07.g1 CHROMAT_FILE:
MSMg01no069_f07.g1 PHD_FILE: MSMg01no069_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:03 2005
         (436 letters)



>mm_chr17_4355279_4356114
          Length = 836

 Score =  801 bits (414), Expect = 0.0
 Identities = 429/434 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtaacaaacttctctccaactgaatctggctgcagaattactttataagaggaaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgtaacaaacttctctccaactgaatctggctgcagaattactttataagaggaaattt 506

                                                                       
Query: 61  gggccttatcccctgacttgatgcccagtgtttgaaatatgcaaagcaacggcatgtggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gggccttatcccctgacttgatgcccagtgtttgaaatatgcaaagcaacggcatgtggt 446

                                                                       
Query: 121 ggagaacacagtgtccttcctgtgtactgggaagaggctccttgcccaaattcttaaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggagaacacagtgtccttcctgtgtactgggaagaggctccttgcccaaattcttaaatt 386

                                                                       
Query: 181 ttgctttcatgggggaagtggctggccagcttctgtccaccactaaggggaaatgatcac 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgctttcatcggggaagtggctggccagcttctgtccaccactaaggggaaatgatcac 326

                                                                       
Query: 241 catattcatgtcatgcctgagagcagtctcagggtgtctcagcagccactgtaaacagat 300
           || |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagaggcatgtcatgcctgagagcagtctcagggtgtctcagcagccactgtaaacagat 266

                                                                       
Query: 301 cagctttcaatagcatccaggccatagtccaggggggcactaacatacctaggacttaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagctttcaatagcatccaggccatagtccaggggggcactaacatacctaggacttaca 206

                                                                       
Query: 361 ggtactgttttagtttcatcactgtgataaaatgtgctgtctacaaacaagttaaggggt 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 205 ggtactgttttagtttcatcactgtgataaaacgtgctgtctacaaacaagttaaggggt 146

                         
Query: 421 aaatggtttatttg 434
           ||||||||||||||
Sbjct: 145 aaatggtttatttg 132


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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