BAC Information

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BAC

Clone NameMSMg01-070E13
Chromosome17 (Build37)
Map Location 10,210,272 - 10,210,419
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667165, EG667170, LOC666143, 4932702K14Rik
Downstream geneQk, LOC675815, Pacrg, Park2, LOC100041113
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070E13.T7 (MSMg01no070_e13.b1)MSMg01-070E13.TJ (MSMg01no070_e13.g1)
ACCAG294342AG294343
length6901,088
length of high quality
(start - end)
157 (54 - 210)---
definitionCHROMAT_FILE: MSMg01no070_e13.b1 PHD_FILE: MSMg01no070_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:17 2005CHROMAT_FILE: MSMg01no070_e13.g1 PHD_FILE: MSMg01no070_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGCTATACGACTCCTATTTCGACAAGATCCGCGGAATTCTTATATGTGC
TTAAATTCTTTTTTTTTTTTCCTTGTGACTAGGTCTCTTTGTAGCCTAGG
CTAGCCTTGTCATTCACTGTCTACAAGTTATACCTTTGTGAGTCCTGAGA
AATACCAGGTAGTGTTTTTGTTTGTTTTGTTTGTTTGTTTGTTGTTCTTT
AATAACGTAGCATTGCCATGCCCTTCTTCTCTTCTGTACGAATTCTTGTC
TTTTTGAAATACCCACTATTATTTAATTACTTCGCCATTAGACATCCCCC
TTTTTTTAATCTATTTTAGTCCCTCTCCCTTTTAATAAATTCATCCCATC
CCCCCCCCCAATCTTTCCCTTTTACCCCTTATGCACATCCAAGTTACCTT
CCCCCCCCTCCTACTCTCCCTTGTCTCATCTCCTCCCCCCCCTCCTTTAT
GCCCTTATATTTGTTAACCTTCCTTTATAAACTCCTTTTATTTTTATTTT
TTCTCTTTTCTCTATTTTTATCTTCACTCCTATTTATTTTCCTATTTCTC
TCTTTTTTTCTTTTACTTCTTCCTTTTATTTTTTATCTTTTTCCCCTCCT
ATCATTTTTATTTTTTTCACCTCCCCACCCTTCATCAACTCACATATTCT
TTTCTTATCCCCACACTTATACCCCCATTTTCACCCATCG
CCCAACGCCCGNCGGGNNNGCCCGGGNGGGCCGGCCGGTTTTCCAAAACA
GAGGGGGGTCACCCTCCCCCCCATTTTTCCCCCCAAACAAGCTGCTTTGT
TCCCCCCAGCCCCGTTTCCCCTCGGCCTCGTCTCTTTCTTTTCTTTTTCT
GTTCTCTTCNCNNNCTNNACTTNTCACTGTATAAACGTGACAACACCTAC
CGCTCGCTTTGATGCTTCTGTCCCTTGCTGNTTATTTTTTGTCGCTGTCT
CTCGCCGCAGGGTTCTTCGCTACACTTCTTGAGTGTACCCCCTCCTCTCC
CACCTCCGTTCTTACCTATATTATCCATATACCTAACAATCATAATATAT
GTTGTCTAAATATCTAATATATACTATTGTTATAACACAACTACACCTNT
TACTATACCAATATATCAGTAATACTAAGGAACATCACCAACTCACCACA
CACACGATAGTTACACACCCACCATTAATAGACGCACCCCGTACTAAACT
CAAAAACTACTCAAACTAATACCAACTGACTATTATCAAATAATAATTAT
TTATATTTTCTATAGACTTTAATTTAATATTATTATATATTATTTAACTC
ACAACTTATATAAACTTTTTATTATTATTATAATCATATTCATTTAATCT
CCCTACTTTCTTTCTCAACTTATGTCTATTCCTTATACGCCAGCTTCCAC
CTCCTACACACCGATCTACGTTCCTCTCGTCGCATCTTGGATAAAGCTGT
GTGTAGGATAGTAGCAGCTGGCGCTGCGCATAAGTGTTGTAGAGAAGTGC
ACGTCAGTATGCGCATGCCGACACCACGCGATACTTTCACTCACTCTATT
GTCGGCCGTGGCTCTCTGCATCGCCATTTATTTGTTTTGTGCGTCTGGTG
TACGTCGCTGCCGTGCTGCCTCCTCTCGTCGTGACAGCCCCGCGGTCTGC
GCCTCGTTGTCCCCGACGCGGTCCTCGATTGTTGCTGACTTTCACTTACT
CCATATTTTTCAAGCTCTCACTCTCATTCGTCATTTACCATATCTCGACC
CTCTCTCCCGGCCCGCCTCCGCGCTACCCTGTTTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_e13.b1 MSMg01no070_e13.b1 CHROMAT_FILE:
MSMg01no070_e13.b1 PHD_FILE: MSMg01no070_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:17 2005
         (157 letters)



>mm_chr17_10210103_10210658
          Length = 556

 Score =  234 bits (121), Expect = 2e-66
 Identities = 145/157 (92%), Gaps = 9/157 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcttttttttttttccttgtgactaggtctctttgtagcctaggctagccttgtcat 60
           |||||||||||||||   ||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 317 aattctttttttttt---cttgtgactaggtctctttgtagcccaggctagccttggcat 261

                                                                       
Query: 61  tcactgtctacaagttatacctttgtgagtcctgagaaataccaggtagtgtttttgttt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 260 tcactgtctacaagttatacctttgtgagtcctgagaaataccaggtagtgtttttg--- 204

                                                
Query: 121 gttttgtttgtttgtttgttgttctttaataacgtag 157
             ||||||||||||||||||||| |||||||| ||||
Sbjct: 203 --tttgtttgtttgtttgttgtt-tttaataatgtag 170


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 556
Length adjustment: 8
Effective length of query: 149
Effective length of database: 548
Effective search space:    81652
Effective search space used:    81652
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)