BAC Information

Click to search

BAC

Clone NameMSMg01-070P06
Chromosome17 (Build37)
Map Location 88,596,761 - 88,596,887
singlet/doubletsinglet
Overlap genenone
Upstream geneMcfd2, Ttc7, 1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2, Kcnk12, LOC626888, LOC668863, EG626920, Msh6, Fbxo11, EG225058
Downstream geneFoxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070P06.T7 (MSMg01no070_p06.b1)MSMg01-070P06.TJ (MSMg01no070_p06.g1)
ACCAG294852AG294853
length682687
length of high quality
(start - end)
359 (43 - 401)360 (72 - 431)
definitionCHROMAT_FILE: MSMg01no070_p06.b1 PHD_FILE: MSMg01no070_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:12 2005CHROMAT_FILE: MSMg01no070_p06.g1 PHD_FILE: MSMg01no070_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCTGGTGGCCTTTTTGGGGTCACTCATATATACTATTATATCATCTTCA
AATAGTGATATTTTGACTTCTGCCTTTCCATTTATATCCCTTTGATCTCT
TTTTGTTGTCTAACTGCTCTGGCTAGGACTGCAAATACTATATTGAATAG
GTAGGAGAGAGTGGGCAGCTTTGTCTAGTCCCTGATTTTAGTGGGATTGC
TTCAAGTTTCTATCCATTTACTTTGATGTTGGCTACTGGTTTGCTGCATA
CTTCTTTTATTACGTTTAGGTATGGGCTTTGAATTCCTGATCTTTCCATG
ACTTTTATCATGAAAGGGTGTTGGATTTTTGTCAAATGCTTTCTCAGCAT
CTGATGGGATAATCATGTGATTTTTGTCTTTGAGTTTGTTTATATAGTGG
ATTACGTTGATGGATTTCTGTATTTTGAACCATCCCTGCATCCCTGGGAT
GAAGCCTACTTGATCATGATGGATGATTGCTTTGATGTGTTCTTGGATTT
GGTTTGGGAGAATTTTATTGAGTATTTTCACATCAATATTCATAAGGGAA
ATTGCTCTGAAGTTCTCTTTCTTTGTTGGGTCTTTATGTGGGTTAGGTAT
CATAGTAGCTGTGGTTTCTTAGAACGAATTGA
AATGCAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTTCCTAGGAGGTTTGAGCCATAAAGAG
TTCTTCTTGGACTAGAGGTCATTTTAGTTTTCCGTTGGTTTACTCATTGT
CACTCCCTTCTTTGTGTGTTGTTTCAGAAAAGGCCACAGTGGCCAGGTAC
TCTTACACGCGTTCTCGCGACCGGCCAGGAAAGACGCAACAAACCGTAAT
CTTCTGCGGCAAAGCTTTATTGCTTACATCTTCAGGAGCCAGAGAGCAAG
AAAGCAAGAGAAAGAACAAGAAAGCAAGAGAAAGAACAAGAACAAGAAAG
CAAGAGGAAGAACAAGAGCAAGAGAGAGAAAAAGAATGGCAAAACCCCGT
CCCTTTTAAGGAGAATTATCCTCCGCCTAGGACGTATTACTCCCTGATTG
GCTGCAGCCCATCGGCCCAGTTGTCATCACAAGAAAGGCAGAACACATGG
CGGGAAAACTGCCCCTGCACGTGTGCAGATTATGTTTACCACTTAGAACA
CAGCTGTCAGCGCCATCTTGTAATGGCAAATGTGAGGGCGGCTCCCAACA
TCTCCCCCTTTTCTTTTAATAAGAGCAATAGGCCACCCATATTAATGAGA
GTGGAGATAGAGGTCAAATCCCCAGTGTGCAAGTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_p06.g1 MSMg01no070_p06.g1 CHROMAT_FILE:
MSMg01no070_p06.g1 PHD_FILE: MSMg01no070_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:12 2005
         (360 letters)



>mm_chr17_88596561_88597320
          Length = 760

 Score =  238 bits (123), Expect = 4e-67
 Identities = 126/127 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttcctaggaggtttgagccataaagagttcttcttggactagaggtcattttagtttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttcctaggaggtttgagccataaagagttcttcttggactagaggtcattttagtttt 260

                                                                       
Query: 61  ccgttggtttactcattgtcactcccttctttgtgtgttgtttcagaaaaggccacagtg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 ccgttggtttactcattgtcactcccttctttgtgtgttgtttcagaaaaggtcacagtg 320

                  
Query: 121 gccaggt 127
           |||||||
Sbjct: 321 gccaggt 327


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)