Query= MSMg01no072_a07.b1 MSMg01no072_a07.b1 CHROMAT_FILE:
MSMg01no072_a07.b1 PHD_FILE: MSMg01no072_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:37 2005
(571 letters)
>mm_chr17_94637113_94638084
Length = 972
Score = 1046 bits (541), Expect = 0.0
Identities = 562/569 (98%), Gaps = 1/569 (0%)
Strand = Plus / Minus
Query: 4 aggggacttccatttttcttttgttttattctattacaaaggtataaagtttctattctt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 aggggacttccatttttcttttgttttattctattacaaaggtataaagtttctattctt 713
Query: 64 taaaacactggaattctcccacctggaaacatgattttaaggccagcgtttgtttattgt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 taaaacactggaattctcccacctggaaacatgattttaaggccagcgtttgtttattgt 653
Query: 124 ggtgtaatgtcttggtaaaggaagaatcaagagactaaaactaaggcactactggcagat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ggtgtaatgtcttggtaaaggaagaatcaagagactaaaactaaggcactactggcagat 593
Query: 184 ataatgattgctacatcttcaatactgacttcatgcctccgaaagccttttcctgttgtt 243
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 592 ataatgattgctacatcttcaatactgacttcatgtctccgaaagccttttcctgttgtt 533
Query: 244 gtttgcagttgttagctgagtgagattgtaaacatggtagtgagtagcattccatcttca 303
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 532 ggttgcagttgttagctgagtgagattgtaaacatggtagtgagtagccttccatcttca 473
Query: 304 tggatgcagtaaccaccctattcatgtgaattcaatgaacatcgtgctgtcacctatggc 363
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 472 tggatgcagtaaccaccctattcatgtgaattcaatgaacattgtgctgtcacctatggc 413
Query: 364 tcttagagtctgtcctccagcatccaactgctgcttctttctcagggttagaaaggagca 423
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 412 tcttagagtctgtcctccagcatccagctgctgcttctttctcagggttagaaaggagca 353
Query: 424 aggaaggagactgttgtcagagagttgctaattgtaaagagatggtaaataatctacaaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 352 aggaaggagactgttgtcagagagttgctaattgtaaagagatggtaaatagtctacaaa 293
Query: 484 a-tatccccatcttaaactccctgccctggctcttccctaagtgagcctctgcttttctc 542
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 aatatccccatcttaaactccctgccctggctcttccctaagtgagcctctgcttttctc 233
Query: 543 actttgtgcttctgtggaatcatgcttgg 571
|||||||||||||||||||||||||||||
Sbjct: 232 actttgtgcttctgtggaatcatgcttgg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 972
Length adjustment: 10
Effective length of query: 561
Effective length of database: 962
Effective search space: 539682
Effective search space used: 539682
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no072_a07.g1 MSMg01no072_a07.g1 CHROMAT_FILE:
MSMg01no072_a07.g1 PHD_FILE: MSMg01no072_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:37 2005
(544 letters)
>mm_chr17_94468555_94469498
Length = 944
Score = 1013 bits (524), Expect = 0.0
Identities = 539/544 (99%)
Strand = Plus / Plus
Query: 1 cagatggtgttagacatgacattataaagagaaaggaagtttaacctggatattgggcta 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 cagatggtgttagacatgacattataaagagaaaggaagtttaacctggatattaggcta 260
Query: 61 ttttatctcctctaatagggtaaaggggagggcatgggtctatgtgcatggggacttgct 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttatctcctctaatagggttaaggggagggcatgggtctatgtgcatggggacttgct 320
Query: 121 ggcccagagcagaggcaggggcagtcctactcatatcaatctcagggtgagatttccggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcccagagcagaggcaggggcagtcctactcatatcaatctcagggtgagatttccggg 380
Query: 181 atttggacacaccatgacactactcatgcttcaggcctattccccgctgtggctccctct 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 atttggacacaccatgacactactcatgcttcaggcctattccctgctgtggctccctct 440
Query: 241 caaataagcattgggtcacctttatttctgtttcaagaactcattgaatgctagtgtggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaataagcattgggtcacctttatttctgtttcaagaactcattgaatgctagtgtggt 500
Query: 301 tggttcagacatttccaaacagatagccacattggactctgaaatgatgagggaaaggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggttcagacatttccaaacagatagccacattggactctgaaatgatgagggaaaggaa 560
Query: 361 tgttatagtgtacatttgcttccggagaagcactttgacttgtgtgagccactcccaggt 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttacagtgtacatttgcttccggagaagcactttgacttgtgtgagccactcccaggt 620
Query: 421 gtaaacaggccaaaggatatataaagttcaaacttggtgccgggacaaaatactgaatca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtaaacaggccaaaggatatataaagttcaaacttggtgccgggacaaaatactgaatca 680
Query: 481 ttgaatgggaagagaattttaaatgacagtcttagtaataatatatagctatacagaatg 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 681 ttgaatgggaagagaattttaaatgaaagtcttagtaataatatatagctatacagaatg 740
Query: 541 tgat 544
||||
Sbjct: 741 tgat 744
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
