Query= MSMg01no072_k23.b1 MSMg01no072_k23.b1 CHROMAT_FILE:
MSMg01no072_k23.b1 PHD_FILE: MSMg01no072_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:30 2005
(457 letters)
>mm_chr17_65118240_65119097
Length = 858
Score = 843 bits (436), Expect = 0.0
Identities = 445/448 (99%), Gaps = 1/448 (0%)
Strand = Plus / Minus
Query: 1 gaattctattgttgtgac-ctaaaacagccagagatgataaatttaaaaacgaacatggc 59
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gaattctattgttgtgacaataaaacagccagagatgataaatttaaaaacgaacatggc 389
Query: 60 tgtattccaattatacttcatattcaaaactagacaatgagctggacttggtcatgggac 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tgtattccaattatacttcatattcaaaactagacaatgagctggacttggtcatgggac 329
Query: 120 atagcacatagcttgctaatctatgatatatggttttgatgtatgtttctgtgtttacat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 atagcacatagcttgctaatctatgatatatggttttgatgtatgtttctgtgtttacat 269
Query: 180 ggttttgcttcttctattactgtgtctttaaaattcaatgtgtactttcccctgacatct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ggttttgcttcttctattactgtgtctttaaaattcaatgtgtactttcccctgacatct 209
Query: 240 ttccccatctctttgcatttggttactattgttacatataaacatgtgctcacatgtatg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttccccatctctttgcatttggttactattgttacatataaacatgtgctcacatgtatg 149
Query: 300 tacacatgtgaatatatacatacaacatgctgagcctacttaatgctgctcagatgccta 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 148 tacacatgtgaatatatacatacaacatgctgagcctacttaatgctgctcagacgccta 89
Query: 360 tggtttgaggctgaccacttagtgttgaatggccaggacatctgttgtgaaattgtgtct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 tggtttgaggctgaccacttagtgttgaatggccaggacatctgttgtgaaattgtgtct 29
Query: 420 tctatataggacagagaagtttcatcca 447
||||||||||||||||||||||||||||
Sbjct: 28 tctatataggacagagaagtttcatcca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 858
Length adjustment: 10
Effective length of query: 447
Effective length of database: 848
Effective search space: 379056
Effective search space used: 379056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no072_k23.g1 MSMg01no072_k23.g1 CHROMAT_FILE:
MSMg01no072_k23.g1 PHD_FILE: MSMg01no072_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:30 2005
(522 letters)
>mm_chr17_64967940_64968860
Length = 921
Score = 955 bits (494), Expect = 0.0
Identities = 515/522 (98%), Gaps = 1/522 (0%)
Strand = Plus / Plus
Query: 1 aggtaccacagaggccagaggtgttggatacccctggagctggaattatagacagttgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtaccacagaggccagaggtgttggatacccctggagctggaattatagacagttgtg 260
Query: 61 agttgcctgatgtcagtgctgggaattgaacccaggtcttataagagcagcatgcattct 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatgcctgatgtcagtgctgggaattgaacccaggtcttataagagcagcatgcattct 320
Query: 121 taactgttgagctatcttcccagtcctgacatttctactctttcttactttataatttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taactgttgagctatcttcccagtcctgacatttctactctttcttactttataatttat 380
Query: 181 ttttttgatacaacaaagattaatttttttcataagagatcatgagtgttttgtatcatg 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttt-gatacaacaaagattaatttttttcataagagatcatgagtgttttgtatcatg 439
Query: 241 ggttgtggattatgtgcccaatactttcatgtcctagagcatggcgggcaacagcctttc 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 440 ggttgtggattatgtgcccaatactttcatgtcctagagcatggtgggcaacagcctttc 499
Query: 301 atgtgttccttggttttctcttgtaatgcataattgagatgctcctgagagtcaggcgtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 500 atgtgttccttggttttctcttgtaatgcataattgagatgctcctgagagtcgggtgtt 559
Query: 361 gtgccagccatcaggcatggggcgcaaaacagctgcccacttagtggggaaagagggatg 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtgccagccatcaggcatggggagcaaaacagctgcccacttagtggggaaagagggatg 619
Query: 421 tcacgcatgagtcatccactgggtgattgtgataatgctgtggagaaaatgaagtgacgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcacgcatgagtcatccactgggtgattgtgataatgctgtggagaaaatgaagtgacgt 679
Query: 481 ggagaaagagtactataccaaaggctattttagatagaatag 522
||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 680 ggagaaagagtactataccgaaggctattttagatagaatag 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 921
Length adjustment: 10
Effective length of query: 512
Effective length of database: 911
Effective search space: 466432
Effective search space used: 466432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
