BAC Information

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BAC

Clone NameMSMg01-072N05
Chromosome17 (Build37)
Map Location 58,766,597 - 58,766,973
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap5c, LOC674419, LOC620408, EG545216
Downstream geneLOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik, LOC100043537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072N05.T7 (MSMg01no072_n05.b1)MSMg01-072N05.TJ (MSMg01no072_n05.g1)
ACCAG296272AG296273
length688695
length of high quality
(start - end)
383 (34 - 416)417 (75 - 491)
definitionCHROMAT_FILE: MSMg01no072_n05.b1 PHD_FILE: MSMg01no072_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:41 2005CHROMAT_FILE: MSMg01no072_n05.g1 PHD_FILE: MSMg01no072_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCCANAAATCCGCGGAATTCTCTCC
CCTGACCCGTTCATCATTGGAGCTTGCCACGGCCATCCTTCCCACTGGTC
CTGCCACTGTCACCACCACCTCTACTGACTGCCCTTGATGTTAGCACTGC
CTGCCCAAATATCCTTGCTTTTCTTCTAAAAGCTGTAACACTTCCAGCTT
TTCATGCTGGAACAAGACCCTGGGCACCTATTTATCCCAGTTCTCCAGAG
AACAAGTTTAATTGAAACAAACAAAAATAGAAAACTAAAATCTTTCACCG
GCATCCCCTTTAATCTTAGCATATGAGAAGAAGAGGCAGGGGTGGGTCTC
CTTGAGTTTGAGGCTATCTTTTTTTTTTTTTTTTAAGTAAGTTCCAGGAA
AGCCAGGGCCCTGTAGTTTGAGAAAAAATAAATTAAAATAAAGGAAATAA
GTAAAGGATAGAAAACCGATATAAAACATAACAAAAAACAAAACTAAATA
TTTCCCCAATTCTCTTGCTCTCTCTGACTTCAAGCTAATGGGATTAAATG
AATCAGAACTGGTCACCAATGGTAGCAATAGCATCTTGAAACATTGCTCT
TAACTGATTCGAAAACCCAGTTTCTCTGATAAAACTGGACTCATTTATCA
AATGCCCCATAACACTGTCCCAAGACAGGTTATTGTAT
CAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGACCTGTTTGATTCTGTTTTTCT
GTAATTCTTTAATAAGTGTTTGAGTTTCCTCTTTAAGGTCTTCTACCTGT
TTTCCTGTGTTCTCTTGTATTTCTTTAAGGAAATCATTTATGTCCTTCTT
AAAGTCTTCCATTATCATCATGAGATGTTATTCTAAGTCAGAGTCTTGCT
TTTCCAGTGTGCTGGGGGTATCCAGGGTTTGCTGCATTGTGAAAACTGGT
TTCTGGTAATGCCAAGTAGCCTTAATTTCTGCTACGTATGTTCTTGCCCT
TGCCTCTCACCATCTGGTTATCTCTGGTTGTAGCTGGTCTTGCTGTCTCT
GACTGTGGCTTGTTCCTCTTGTAAGCCTGTGTGTCAACACTCCTGGGAGA
ACAGTTCTCTCTGGGAGGAATTTGGATATTTAGAGCTGTGGCACAGGGTC
ATCTCCAGGCACAGATGGATACCAGAAGGATCCTGTCCCAGGCTGCTCTT
CTGTCCCTCTGTTCTGAGGGCATTGTTTATGCCACTTCAAGCAGAAATGG
TGGTCTTACCTGTGCTCACAGTTGTGTTACCACTCCTGAGAGATCAGCTC
TTTTCCAGTATTATTTGCGTATGGAGAGTTGTGCCCCAGTTCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_n05.b1 MSMg01no072_n05.b1 CHROMAT_FILE:
MSMg01no072_n05.b1 PHD_FILE: MSMg01no072_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:41 2005
         (383 letters)



>mm_chr17_58766391_58767176
          Length = 786

 Score =  601 bits (311), Expect = e-176
 Identities = 362/381 (95%), Gaps = 8/381 (2%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctctcccctgacccgttcatcattggagcttgccacggccatccttcccactggt 66
           ||||||||||||||||  | ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 207 gaattctctcccctgaagcattcatcattggagcttgccactgccatccttcccactggt 266

                                                                       
Query: 67  cctgccactgtcaccaccacctctactgactgcccttgatgttagcactgcctgcccaaa 126
            ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tctgccactgccaccaccacctctactgactgcccttgatgttagcactgcctgcccaaa 326

                                                                       
Query: 127 tatccttgcttttcttctaaaagctgtaacacttccagcttttcatgctggaacaagacc 186
           || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 327 tacccttgcttttcttctaaaagctgtaacacttccagcttttcatgctggagcaagacc 386

                                                                       
Query: 187 ctgggcacctatt-t--atcccagtt-ctccagagaacaagtttaattgaaacaaacaaa 242
           ||||||||||||| |  ||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 387 ctgggcacctattattcatctc-gtttctccagagaacaagtttaattgaaacaaacaaa 445

                                                                       
Query: 243 aatagaaaactaaaatctttcaccggcatcccctttaatcttagcatatgagaagaagag 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aatagaaaactaaaatctttcaccggcatcccctttaatcttagcatatgagaagaagag 505

                                                                       
Query: 303 gcaggggtgggtctccttgagtttgaggctatcttttttttttttttttaagtaagttcc 362
           ||||||||||||||| |||||||||||||||||||||||||||||    |||||||||||
Sbjct: 506 gcaggggtgggtctctttgagtttgaggctatctttttttttttta---aagtaagttcc 562

                                
Query: 363 aggaaagccagggccctgtag 383
           |||||||||||||||||||||
Sbjct: 563 aggaaagccagggccctgtag 583


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 786
Length adjustment: 9
Effective length of query: 374
Effective length of database: 777
Effective search space:   290598
Effective search space used:   290598
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)