Query= MSMg01no073_g05.b1 MSMg01no073_g05.b1 CHROMAT_FILE:
MSMg01no073_g05.b1 PHD_FILE: MSMg01no073_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:26 2005
(258 letters)
>mm_chr17_47728420_47729077
Length = 658
Score = 491 bits (254), Expect = e-143
Identities = 257/258 (99%)
Strand = Plus / Plus
Query: 1 gctataaaataagacaaactgtttcaacgaggagagaaaccactggggcagtgaccttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctataaaataagacaaactgtttcaacgaggagagaaaccactggggcagtgaccttct 260
Query: 61 gtgactgaagcaatcccatcatgcctccttcctgtatgagaagccatccccatatgtgga 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 gtgactgaagcaatcccatcatgcctccttcctgtatgaaaagccatccccatatgtgga 320
Query: 121 ttctgaccccttgctcagcgcaagactagtgtgtagaccagtgtgtagactagtgtgtag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctgaccccttgctcagcgcaagactagtgtgtagaccagtgtgtagactagtgtgtag 380
Query: 181 accagtgcatagtccagtgtgtagactagtgtgtagatggatctcactgcttatatattg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accagtgcatagtccagtgtgtagactagtgtgtagatggatctcactgcttatatattg 440
Query: 241 tcctgtgctttcctgggg 258
||||||||||||||||||
Sbjct: 441 tcctgtgctttcctgggg 458
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 658
Length adjustment: 9
Effective length of query: 249
Effective length of database: 649
Effective search space: 161601
Effective search space used: 161601
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no073_g05.g1 MSMg01no073_g05.g1 CHROMAT_FILE:
MSMg01no073_g05.g1 PHD_FILE: MSMg01no073_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:26 2005
(404 letters)
>mm_chr17_47856192_47856998
Length = 807
Score = 721 bits (373), Expect = 0.0
Identities = 398/407 (97%), Gaps = 3/407 (0%)
Strand = Plus / Minus
Query: 1 tattggatc-cacacctacttctggacccatctgctgcggccagcagcttggaacctact 59
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tattggatcacacacctactcctggacccatctgctgcggccagcagcttggaacctact 548
Query: 60 agatcctggctattccctcaggagacaccttgaagagggtggacaggaacactcggttgt 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 547 agatcctggctattccctcaggagacaccttgaagagggtggacaggaacactcagttgt 488
Query: 120 aagtcctcaggagaagtaagaccctgggaggagcagggtgttttggggtcaagac--gat 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 487 aagtcctcaggagaagtaagaccctgggaggagcagggtgttttggggtcaagacttgat 428
Query: 178 aaatgttcacatttctgtggtggcccccacgggccctgcatccatcttcatcctcctctc 237
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 427 aaatgttcacatttctgtggtggtccccacgggccctgcatccatcttcatcctcctctc 368
Query: 238 tcttcgtgcatttgatagactgtcgcatgtcttaccattacgttctttggaaaccagtgt 297
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tcttcgtgcatttgaaagactgtcgcatgtcttaccattacgttctttggaaaccagtgt 308
Query: 298 ctactgtctatctgctctttggccctgacaagccacttgctttctgagccccagataaaa 357
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ctactgtctatctgttctttggccctgacaagccacttgctttctgagccccagataaaa 248
Query: 358 tgagatgaggaaactctgcagtgtagccacataatccagcgaagcca 404
||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 247 tgagatgagaaaactctgcagtgtagccacataatccagcgaagcca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 807
Length adjustment: 9
Effective length of query: 395
Effective length of database: 798
Effective search space: 315210
Effective search space used: 315210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
