BAC Information

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BAC

Clone NameMSMg01-075L09
Chromosome17 (Build37)
Map Location 91,576,975 - 91,577,212
singlet/doubletsinglet
Overlap genenone
Upstream geneNrxn1, EG668871, LOC668872
Downstream geneLOC627235, LOC100043741, LOC100043742, EG640442
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075L09.T7 (MSMg01no075_l09.b1)MSMg01-075L09.TJ (MSMg01no075_l09.g1)
ACCAG298462AG298463
length682684
length of high quality
(start - end)
240 (72 - 311)596 (76 - 671)
definitionCHROMAT_FILE: MSMg01no075_l09.b1 PHD_FILE: MSMg01no075_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:27 2005CHROMAT_FILE: MSMg01no075_l09.g1 PHD_FILE: MSMg01no075_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGGCATGGATCCGCGGAA
TTCAGTGTTTCCAAAAAAGCACTGCACAGNTGATGGACACCAGTTGATGA
ATATTTGCACCTGCCTCTCCTAGCAGTGTTTTGGTTAACATGTGATATTC
TGTTATATGATATATTGTTTTGTATTATATTTTAATTTGGTTACACATCT
CAAACGCAGGTTTTAGGTAATTCCAATCTTTGTTGTCAGGATATTATCAG
CCCAATCCAATAACAAACACCAAACCCAAATCAGCGGTTTGATCCAGCAG
AAACCACAATTGCTCATGCAATTATCAGGAGTCAGCACAAAAGGCAAGAA
TCAGTTAAATACCATGACAAGTTTTTTGATGTGTTTCTTTCAACAAAGTG
AATACCAGCGAACACCATAAAAGTGTTGCCTGGCTAGTAAAGACTCCTGG
AGCCTTGCAAGGTGTAGTAATGCAAGGATGTCTACTCACTGTTTATGGCA
TTATATTTATATTTTTCTAAACATCATATGTGCTCCTCTCATGTGTCTGC
ATCAGCGAAACATTCCTCTCTCAAGACAGTTTCCAGGAAAACATTACGTG
ACACAAGTTGAATTTCAAAGAATCCAGAAATTTCCACTTCTTCATTGCAG
CACTTCTTCTTGTCTAATTGTGAATTTAGAAC
NACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAAAAGTTAGACTCCAAGGAAACAA
ATAACCCTATTAGAAAATAGGGTACTGACCTAAACAAAGAATTCTCAACT
GAGGAATACCAAACAGCCGAGAAGCACCTAAAAAATGTTTAAAATCCTTA
ATAATCAGGGAAATGAAAATCAAAACAACCCTGAGATTCCACCTCACACC
AATCAGAATAGCTAAGATCAAAAACTCAGGTGACAGCAGATATTGATGAG
GATGTGGAGAAAGTGGAACACTTTTCTATTGCTGGTGGGGTTGCAAGCTG
GTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAGAGAATTGGACAT
TGTACTACAAGAGGACCCACCTATACTCCCACCTGGCATATACACAGAAG
GTGCTGCAACCTGTTGTAAGGACACATGCTCCACTATGTTCACAGCAGCC
TTATTTATAATAGCCAGAAGCTAGAAAGACCTCAAATGTCATTCAACAGA
GGCATTGATACAGAAAATGTGGTACATTTATACAATGGAGTACTACTCAG
TTATTAAAACCAATGAATTCATGAAATTCTTAGGCAAAAGGATGGATCTA
TAAAATATAATCCTGAGTGAGGTAACCCAATCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_l09.b1 MSMg01no075_l09.b1 CHROMAT_FILE:
MSMg01no075_l09.b1 PHD_FILE: MSMg01no075_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:27 2005
         (240 letters)



>mm_chr17_91576775_91577414
          Length = 640

 Score =  408 bits (211), Expect = e-118
 Identities = 231/238 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgcacagntgatggacaccagttgatgaatatttgcacctgcctctcctagcagtgttt 60
           |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 ctgcacagttgatggacaccagttgatgaatatttgcacctgcctgtcctagcagtgttt 260

                                                                       
Query: 61  tggttaacatgtgatattctgttatatgatatattgttttgtattatattttaatttggt 120
           |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 tggttaacgtgtgatattctgttatatgatatattgttttgtataatattttaatttggt 320

                                                                       
Query: 121 tacacatctcaaacgcaggttttaggtaattccaatctttgttgtcaggatattatcagc 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 321 tacacatttcaaacgcaggttttaggtaattccaatctttgttgtcaggatatcagcagc 380

                                                                     
Query: 181 ccaatccaataacaaacaccaaacccaaatcagcggtttgatccagcagaaaccacaa 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaatccaataacaaacaccaaacccaaatcagcggtttgatccagcagaaaccacaa 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)