Query= MSMg01no078_f24.b1 MSMg01no078_f24.b1 CHROMAT_FILE:
MSMg01no078_f24.b1 PHD_FILE: MSMg01no078_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:41 2005
(554 letters)
>mm_chr17_45499645_45500601
Length = 957
Score = 1013 bits (524), Expect = 0.0
Identities = 545/552 (98%), Gaps = 3/552 (0%)
Strand = Plus / Minus
Query: 6 gaattcc-agttctaccgag-atatttctcacctcttgac-acctccaacagtttctctt 62
||||||| |||||||| ||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 757 gaattccaagttctacagagtatatttctcacctcttgacaacctccaacagtttctctt 698
Query: 63 cgctcttagaggaaaatctaactcttcactgtggctctctagaacgtccacagtgtcctg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 cgctcttagaggaaaatctaactcttcactgtggctctctagaacgtccacagtgtcctg 638
Query: 123 tgatcacctctccagtcctccttgctagcttgcccattgttcattctcatcttaggctct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tgatcacctctccagtcctccttgctagcttgcccattgttcattctcatcttaggctct 578
Query: 183 ttacatttctacctgggtattaaaattacttacatatttattactgtgtgtgtgcatggt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ttacatttctacctgggtattaaaattacttacatatttattactgtgtgtgtgcatggt 518
Query: 243 gtatatgtggtagcatgtgtgtgtcatgctgtgcatatctaagacagaggagatggcgtg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gtatatgtggtagcatgtgtgtgtcatgctgtgcatatctaagacagaggagatggcgtg 458
Query: 303 tatgtggtagcatgtgtgtgtcatgtggtagcatgtgtgtgtcatgctgtgcatatctaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tatgtggtagcatgtgtgtgtcatgtggtagcatgtgtgtgtcatgctgtgcatatctaa 398
Query: 363 gacagaagagctggtgtgtatgtggtagcatgtgtatgtcatgtggtagcatgtgtgtgt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gacagaagagctggtgtgtatgtggtagcatgtgtatgtcatgtggtagcatgtgtgtgt 338
Query: 423 catgctgtgcatatctaagacagaggacatggagtgtatatggtagcatttgtgtgtcat 482
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 337 catgctgtgcatatctaagacagaggacatggagtgtatgtggtagcatttgtgtgtcat 278
Query: 483 gtggtagcatgtgtgtgccatgctgtgcatatctaagacagaaaagctggtgtgtatgtg 542
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 277 gtggtagcatgtgtgtgccatgctgtgcatatctaagacagaagagctggtgtatatgtg 218
Query: 543 gtagcatgtgta 554
||||||||||||
Sbjct: 217 gtagcatgtgta 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 86
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 957
Length adjustment: 10
Effective length of query: 544
Effective length of database: 947
Effective search space: 515168
Effective search space used: 515168
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no078_f24.g1 MSMg01no078_f24.g1 CHROMAT_FILE:
MSMg01no078_f24.g1 PHD_FILE: MSMg01no078_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:41 2005
(260 letters)
>mm_chr17_45332811_45333472
Length = 662
Score = 484 bits (250), Expect = e-141
Identities = 259/262 (98%), Gaps = 2/262 (0%)
Strand = Plus / Plus
Query: 1 cagacctgcaagagcagtcagtgctagtaaccgctaagccttctcaccagtcctggtttc 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 cagacctgcaagagcagtcagtgctagtaaccgctaagccttctcaccagccctggtttc 260
Query: 61 tattttaaacatgctgttcttactctctactctgagatgccattgcagactggcaccctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattttaaacatgctgttcttactctctactctgagatgccattgcagactggcaccctt 320
Query: 121 ccccgcccatctcttcccctccctcagagataagaggtgaagaatcccaggttttcctgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccccgcccatctcttcccctccctcagagataagaggtgaagaatcccaggttttcctgg 380
Query: 181 taaagatttcacttctatcgtttaaaaactttaaaaaatgt-ggggg-ggggaggcatga 238
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 381 taaagatttcacttctatcgtttaaaaactttaaaaaatgttgggggtggggaggcatga 440
Query: 239 attttgaaggagagtggggagg 260
||||||||||||||||||||||
Sbjct: 441 attttgaaggagagtggggagg 462
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 662
Length adjustment: 9
Effective length of query: 251
Effective length of database: 653
Effective search space: 163903
Effective search space used: 163903
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
