BAC Information

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BAC

Clone NameMSMg01-080O04
Chromosome17 (Build37)
Map Location 92,036,512 - 92,036,870
singlet/doubletsinglet
Overlap genenone
Upstream geneNrxn1, EG668871, LOC668872, LOC627235, LOC100043741
Downstream geneLOC100043742, EG640442, LOC627395, LOC676141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080O04.T7 (MSMg01no080_o04.b1)MSMg01-080O04.TJ (MSMg01no080_o04.g1)
ACCAG301616AG301617
length693689
length of high quality
(start - end)
357 (46 - 402)231 (146 - 376)
definitionCHROMAT_FILE: MSMg01no080_o04.b1 PHD_FILE: MSMg01no080_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:55 2005CHROMAT_FILE: MSMg01no080_o04.g1 PHD_FILE: MSMg01no080_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGTGGATACCGTTTTGGCATATGGTCTGGTTATAGTTAACATTT
TAATGGTAATCTCTTATGATAATCCAGTGTATTAAACCTCTTCAGACAAT
TCAACACAAAATTATTTTATTGATAATTAAAGATATTTTATTTTAAAATT
AATTGAGTTAAGTTATTTATAACTTGAAAAACAAGATGAGATGAATCTTA
TATTTTAGTAATAAATAATATAGTAATAAAAGAGATTTCATGTGAAAGCA
ATCAGTCAGGATAGTGCAAATCTGTAATCTCAGCACCCACGATGTGAGTG
ATGCAGGATCATCATATATTTATGCCAATCTGGGATATAGAAGGAGGTCT
TGCGTCTAAATTTATCCCAAAATAATCAGAATTTCTTTTAAAAGCAAAGC
TAAAGCTTATTTACATAAATATAAATTCATTACAAAAATAACCCTTTTAG
TTCTAAATTTAGAGTTCTGCAATCTAGAAAACATGCTATAAGGGTCAAAA
GGTCCAATATTATATTAGAATATCTTAAAACTTCCATTTACAATATTCTA
AACGTTTTCCCTTTCATTTCAGTCCTTACCCATATGGAATATGACTCTTA
AACTATTTTGCAATAAGCTATGTTTGTTCAAACAACCACTCAA
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTT
TCTCCACATCCTGTCCAACATATGTTGTCACCTGAGGTTTTGATCTTAGA
CATTCTGATTGGTGTAAGGTAAAATCTTGGTATTGTTTTGACCTTCATTT
CTCTGATCACTAAGAACTTTGCAAATTTCTTTAGTCTGAGATTCCTCAGT
TGTGAATTCTCAGTTTAGTTCTATACCCCATTTTTTGATTGGGTTGTTTC
ATTTTTTGGTGATTAACTTCTTGAGGCTTTTATATATTTTAGATGTTATC
CCTCTATCAGATGCGGGGTTAGTGAAGAAATTTTTTCCCATCTGTAGGTT
GACAAATTGTCTTATCAACTATGCTCTTTGCCTTATATAATCTTTCCAGT
TTCTGGAGGCCCCATTTACCAATTGTTGATCTCAGAGCATGAGCCATTGA
AGTTCTTGTTTAGCAAAATGTCCCCCTGCGTTATTGTATTCCAGACTCTC
TCCCTTTTTCTCTTCCACTTGATTCAATTTATCTGGTTTTATGTTCCCCC
CCTTTATTCCCTCCCACTCCTATTTTCCACTTTTCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_o04.b1 MSMg01no080_o04.b1 CHROMAT_FILE:
MSMg01no080_o04.b1 PHD_FILE: MSMg01no080_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:55 2005
         (357 letters)



>mm_chr17_92036309_92037070
          Length = 762

 Score =  632 bits (327), Expect = 0.0
 Identities = 349/359 (97%), Gaps = 5/359 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccagtggataccgttttggcatatggtctggttatagttaacattttaatggta 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagtggatacagttttggcatatggtctggttatagttaacattttaatggta 263

                                                                       
Query: 64  atctcttatgataatccagtgtattaaacctcttcagacaattcaacacaaaattatttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atctcttatgataatccagtgtattaaacctcttcagacaattcaacacaaaattatttt 323

                                                                       
Query: 124 attgataattaaagatattttattttaaaattaattgagttaagttatttataacttgaa 183
           |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 324 attgataattaaaggtattttattttaacattaattgagttaagttatttataacttcaa 383

                                                                       
Query: 184 aaacaagatgagatgaatcttatattttagtaataaataatata-----gtaataaaaga 238
           ||||||||||||||||||||||||||||||||||||||||||||     |||||||||||
Sbjct: 384 aaacaagatgagatgaatcttatattttagtaataaataatatattatagtaataaaaga 443

                                                                       
Query: 239 gatttcatgtgaaagcaatcagtcaggatagtgcaaatctgtaatctcagcacccacgat 298
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 444 gatttcatgtgaaagcaatcagtcaggatagtgcaaatctgtaatctcagtacccacgat 503

                                                                      
Query: 299 gtgagtgatgcaggatcatcatatatttatgccaatctgggatatagaaggaggtcttg 357
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtgagtgatgcaggatcatcatatatttatgccaatctgggatatagaaggaggtcttg 562


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 762
Length adjustment: 9
Effective length of query: 348
Effective length of database: 753
Effective search space:   262044
Effective search space used:   262044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)