Query= MSMg01no081_k10.b1 MSMg01no081_k10.b1 CHROMAT_FILE:
MSMg01no081_k10.b1 PHD_FILE: MSMg01no081_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:55 2005
(462 letters)
>mm_chr17_66785512_66786373
Length = 862
Score = 772 bits (399), Expect = 0.0
Identities = 449/471 (95%), Gaps = 9/471 (1%)
Strand = Plus / Plus
Query: 1 agacttaaattgaatggaagacagtacgacatgttgagcatctctgattcaaaaacccag 60
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 agacttagattgaatggaagacagtacgacatgttgagcatcgctgattcaaaaacccag 260
Query: 61 catctgaaatgctccaaaatcggaaacactctcagacccaaacactttgaaaaaagaata 120
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catctgaaatgctacaaaatcagaaacactctcagacccaaacactttgaaaaaagaata 320
Query: 121 ctgtcttgggctggtgagatggctcagcggttaagaacactgactgctcttctgaaggtc 180
|||||| ||||| | ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 321 ctgtctcgggctagagagatggctcagcggttaagagcactgactgctcttctaaaggtc 380
Query: 181 ctgagttcaaatcccagcaaccatatggtggctcacaaccatctgtacagctacagtgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgagttcaaatcccagcaaccatatggtggctcacaaccatctgtacagctacagtgtg 440
Query: 241 cttagatataataataaatctttgggccggggcgagaggggctgatgggatcgagcggag 300
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 441 cttagatataataataaatctttgggccggggtgagaggggctgacgggatcgagcggag 500
Query: 301 ttgaccagagtgagcagaggtcctaaaattcaattcccagcaaacacatgatggttcaca 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 ttgaccagagtgagcagaggtcctaaaattcaattcccagcaaacacatgatggctcaca 560
Query: 361 accatctgtacagctatggtgtactcatatacatatatacattaaataaataaatcttaa 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accatctgtacagctacggtgtactcatatacatatatacattaaataaataaatcttaa 620
Query: 421 aaaaaaaaagaa---------tactatcttagctagtgtctctattgctgt 462
|||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 aaaaaaaaagaagaagaagaatactatcttagctagtgtctctattgctgt 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space: 385104
Effective search space used: 385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no081_k10.g1 MSMg01no081_k10.g1 CHROMAT_FILE:
MSMg01no081_k10.g1 PHD_FILE: MSMg01no081_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:55 2005
(483 letters)
>mm_chr17_66951624_66952506
Length = 883
Score = 920 bits (476), Expect = 0.0
Identities = 482/484 (99%), Gaps = 1/484 (0%)
Strand = Plus / Minus
Query: 1 actgtcactgtcttctgac-caccagaagaggacatcagatcccatgacatatggttgtg 59
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 actgtcactgtcttctgacacaccagaagaggacatcagatcccatgacatatggttgtg 696
Query: 60 agccaccatgtgactttacttttaattgttttaaattttcttctctttttctttttcttt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 agccaccatgtgactttacttttaattgttttaaattttcttctctttttctttttcttt 636
Query: 120 tgagtttcttcctgtgccttcagtataactgaaattattggcttgatttccttctacaaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tgagtttcttcctgtgccttcagtataactgaaattattggcttgatttccttctacaaa 576
Query: 180 cctctttatgtattggaaaatatgtgcatataaaactggcagccaccttttgagagggcc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cctctttatgtattggaaaatatgtgcatataaaactggcagccaccttttgagagggcc 516
Query: 240 cataactgatctttggagtgtttagtctagaacaacaggaagccctgtgaagctatctgg 299
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 cataactgagctttggagtgtttagtctagaacaacaggaagccctgtgaagctatctgg 456
Query: 300 ttgactaaaggcaacgtccctgggtttcccattgtcctcatttggatggtctgtgaggtg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ttgactaaaggcaacgtccctgggtttcccattgtcctcatttggatggtctgtgaggtg 396
Query: 360 cccaggacaacctggatacatataaggctggaaggaggggtgactgttcagtaagaaatc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cccaggacaacctggatacatataaggctggaaggaggggtgactgttcagtaagaaatc 336
Query: 420 aaatttcctgctacagattctcctttgcctcgtcgacctgggttggatcatgtgaccact 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aaatttcctgctacagattctcctttgcctcgtcgacctgggttggatcatgtgaccact 276
Query: 480 gcca 483
||||
Sbjct: 275 gcca 272
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
