BAC Information

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BAC

Clone NameMSMg01-082N08
Chromosome17 (Build37)
Map Location 65,148,947 - 65,149,219
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668677, A930002H24Rik, Fert2, LOC669778, Pja2, LOC100043582, Man2a1
Downstream gene4930583I09Rik, LOC100043871, E130009J12Rik, LOC668655, LOC674701, Vapa, Txndc2, Rab31
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082N08.T7 (MSMg01no082_n08.b1)MSMg01-082N08.TJ (MSMg01no082_n08.g1)
ACCAG303108AG303109
length859688
length of high quality
(start - end)
---275 (99 - 373)
definitionCHROMAT_FILE: MSMg01no082_n08.b1 PHD_FILE: MSMg01no082_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:24 2005CHROMAT_FILE: MSMg01no082_n08.g1 PHD_FILE: MSMg01no082_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCAGGAATTCACACTATCACCTACATTGCGATATTTTAAAGGATGACTA
TCTCTATATGGAGCCTCTTCACGTAGTTTCACGTGGTCTCTGTGGTCCAC
ACATGGTGGTCGTTAGTGTTTCGCTTTATACATCACTTGGATTACTACTT
CGATCTCTGCTCTGCCGTAGGTTAGTAGACACGACCATACTAACTCTATA
CTCGTGTGCACGTGTTGCATGATATAATTCAATACTTGTGATATCTGAGT
CTTTTTCAATTCGATGGTACCTATTCATTTAGTTCGTCACGGCCTGACAT
TATCTCCTCCGTTGCTATCTTGTTTTCAATATCATGCTAAAGCACCTGTA
GAGTGCTTTCAGTTGCATACTACATCGGTCCCCAGATCTGCTATAGTCCA
GCGGTCTTACTCACCTCGGCCGCTCATTGGGATTTTGTATTTTGCCCCTC
TTACCTTATCTCCCTTCTGGCATTTACGTATCTCTATACATGACTTCTTC
TCATTATTATTTCTATTCCCTTCACTCGAGCTCTTAGGACAGCTTTTCCT
CTTGTAGCTTCTCGATATCCAGAATTCTCAAAGCGATTTGTTCCTGACCT
TTAATTATTTTCTCCTATTCTATATCCCCTGTATCATTCCACTCTACTAT
TTTACTCCCCTCCTACTGTGCAATCTTACATAATATCTTGCATGTCATTA
TCCACAGTGTTCCAATACTCTCTTCCCCTTGCTCTTATCTTTCTATATAC
CCTTTCTATGCACTCCCTTTTGGTCTTTTCATCCGCAGACTTCCCCCTGC
CTTTCGCAT
NTCAATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATAGCAGGAGGATGGCAGGTGGGCG
ATGAGGTGCGGAGGGTGGTGTTGTGTGAAGTGCTGAGAACTGGACTCAGA
GCCTTGTGAATAGAAGCAAGCCCCACACTGTTATTCAGTATCTCTAGCTC
CTAATAGGCGTTTGTTGTCTCTTTTTAGTTTGGTTTTGTTTTAATCAGTT
GTTACTTGACAGTTTTATACATTGTGTAGAGTCCTGCTCAGCATCCCACC
CTCCCTGTCCCTCCACCACTAACAATCCCCACTCTCCCATCCCCTTCCCA
TTCTCAGGTGTTCTCTTATGTTTCAGCTTTGCTTTAATTTTGTGAGTATG
CTGATTGTACTCTCGCTGTTTGTTTGCCTGCTCGCTTCAGTTATTCTCCC
ACCTACACTTCCCCCTCTCCTCATCTTACTCTCCTATTCCACCTTTCAAT
ACTCATTTTTACATCTTCATTTAATTTACTACACCTTCACTATCTACACC
CACCAAACCCTCCCTTTACCATACTCCCCTCCCCCTCTCATCTTTCTCCT
CTTATAAGTTCCAACCCCCCTCAAATATTAATAATATCAAACTACTATAT
ACATTTTATCATTTTATTCTCTCCTTTCGTCCACCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_n08.g1 MSMg01no082_n08.g1 CHROMAT_FILE:
MSMg01no082_n08.g1 PHD_FILE: MSMg01no082_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:24 2005
         (275 letters)



>mm_chr17_65148745_65149419
          Length = 675

 Score =  484 bits (250), Expect = e-141
 Identities = 268/274 (97%), Gaps = 2/274 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   atgaggtgcggagggtggtgttgtgtgaagtgctgagaactggactcagagccttgtgaa 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 atgaggtgcggagggtggtgttgtgtgaagtgctgagaactggactcagagccttgtgaa 416

                                                                       
Query: 63  tagaagcaagccccacactgttattcagtatctctagctcctaataggcgtttgttgtct 122
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 415 tagaagcaagccccacactgttattcagtatctctagctcctaagaggcgtttgttgtct 356

                                                                       
Query: 123 ctttttagtttggttttgttttaatcagttgttacttgacagttttatacattgtgtaga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ctttttagtttggttttgttttaatcagttgttacttgacagttttatacattgtgtaga 296

                                                                       
Query: 183 gtcctgctcagcatccc-accctccctgtccctccaccactaacaatccccactctccca 241
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gtcctgctcagcatcccga-cctccctgtccctccaccactaacaatccccactctccca 237

                                             
Query: 242 tccccttcccattctcaggtgttctcttatgttt 275
            |||||||||| |||||||||||||||| |||||
Sbjct: 236 cccccttcccactctcaggtgttctcttctgttt 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space:   177156
Effective search space used:   177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)