Query= MSMg01no085_j05.b1 MSMg01no085_j05.b1 CHROMAT_FILE:
MSMg01no085_j05.b1 PHD_FILE: MSMg01no085_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:36:31 2005
(658 letters)
>mm_chr17_65535129_65536188
Length = 1060
Score = 652 bits (337), Expect = 0.0
Identities = 441/485 (90%), Gaps = 24/485 (4%)
Strand = Plus / Minus
Query: 17 gaattc-ctcacatgacttc-ccacatttactcctttgtagcaatagtttcatgtaatgt 74
|||||| ||||||||||||| | | | |||||||||||||||||| |||||||||||||
Sbjct: 476 gaattcactcacatgacttctcaagaaatactcctttgtagcaataatttcatgtaatgt 417
Query: 75 tcatcactcaaccgtaaggaatgtgaaaaacctatttaagttctgaaacagtttaggaag 134
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tcatgactcaaccgtaaggaatgtgaaaaacctatttaagttctgaaacagtttaggaag 357
Query: 135 gtcagaattccatagcagcccccttcccatcaaccaatcaatacactttacttatgtagt 194
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 356 gtcagaattccatagcagcccccttcccatcaaccaatcaatacactttatttatgtagt 297
Query: 195 acatcagcaaactgttattatataataaattgatatcaacggcagaactggcatctatac 254
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 acaccagcaaactgttattatataataaattgatatcaacggcagaactggcatctatac 237
Query: 255 actaatagtaag--------aatatacaggattatagggcacatagaaatagaacataga 306
|||||||||||| ||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 236 actaatagtaagaatatacaaatatacaggattatagggcatatagagatagaacataga 177
Query: 307 tcagtatcttttttatttacatag--atcagtatcttttttt--atttcagctgttgccc 362
| |||||||||||| |||| | || | | ||| ||| ||| ||||||||||||
Sbjct: 176 ttagtatctttttt------atagaaaaca-t-tgtttatttacattccagctgttgccc 125
Query: 363 cct-cccccacagtaccccttcacagttctatgtcccatttctcctccccattgtcttcg 421
||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 124 cctccccccacagtacctcttcacagttctatgtcccatttctcctccccattgtctttg 65
Query: 422 agtgggtgctccccccaaccaggtccccctccttcccccggggcttcaagtttttcaagg 481
|| ||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 64 agagggtgctccccacaaccaggtccccctcctt-ccctggggcttcaagtttttcaagg 6
Query: 482 attag 486
|||||
Sbjct: 5 attag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1060
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1050
Effective search space: 680400
Effective search space used: 680400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no085_j05.g1 MSMg01no085_j05.g1 CHROMAT_FILE:
MSMg01no085_j05.g1 PHD_FILE: MSMg01no085_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:36:31 2005
(453 letters)
>mm_chr17_65442856_65443708
Length = 853
Score = 774 bits (400), Expect = 0.0
Identities = 433/450 (96%), Gaps = 10/450 (2%)
Strand = Plus / Plus
Query: 4 tagggaaggcactgactattttcctgtctacaagagtttacagggtagagtcattccttc 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 204 tagggaaggcactgactattttcctgtctacaagagtttacagggtagagtcatgccttc 263
Query: 64 cctttaccccatgtcctggcaatattaaaaatgccatctgtgataatctgcaaatgtcag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cctttaccccatgtcctggcaatattaaaaatgccatctgtgataatctgcaaatgtcag 323
Query: 124 tttactagactgatcctcaagtgggtaacatggtgacctactgcccgagcttcacactca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttactagactgatcctcaagtgggtaacatggtgacctactgcccgagcttcacactca 383
Query: 184 cctctgtgacatcaggtctgctttctctgccattctttgctttgccctaaacacacacac 243
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 384 cctctgtgacatcaggtctgctttctctgccattctttgctttgccctatacacacacac 443
Query: 244 acacacacacacacacacacacacacacacacacacacacacacacacacatatgctaag 303
||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 444 acacacacacacacacacacacacacacacacacacacacaca----------tgctaaa 493
Query: 304 cctaacctactcattttgtataacgttacttgtatgtatgttttaaaagctgactgtttg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 cctaacctactcattttgtataacgttacttgtatgtatgttttaaaagctgactgtttg 553
Query: 364 gtattggataactgattagtgcgctcttccctggggacggctatttctcccactctccgt 423
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||
Sbjct: 554 gtattggataactgattagtgtgctcttccctggggaaggctatttctcccactctcagt 613
Query: 424 atttcttagctgcctgtacttctttgtgta 453
|||||||||||||||||| |||||||||||
Sbjct: 614 atttcttagctgcctgtagttctttgtgta 643
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space: 373449
Effective search space used: 373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
