BAC Information

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BAC

Clone NameMSMg01-087F03
Chromosome17 (Build37)
Map Location 82,878,819 - 83,003,571
singlet/doubletdoublet
Overlap geneEG625514
Upstream geneSlc8a1, EG668832, LOC100043707, LOC625467, LOC668836, EG433141
Downstream geneLOC100043711, LOC100043900, AW548124, EG545226, Eml4, Cox7a2l, Kcng3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087F03.T7 (MSMg01no087_f03.b1)MSMg01-087F03.TJ (MSMg01no087_f03.g1)
ACCAG306386AG306387
length684684
length of high quality
(start - end)
206 (52 - 257)283 (85 - 367)
definitionCHROMAT_FILE: MSMg01no087_f03.b1 PHD_FILE: MSMg01no087_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:24 2005CHROMAT_FILE: MSMg01no087_f03.g1 PHD_FILE: MSMg01no087_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,003,369 - 83,003,571)(82,878,819 - 82,879,088)
sequence
GGGACATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGTACTCACATTGGGGTATTTTTGCAGATGCTGATAAGA
GGAACTTGTGTACCATGGGCCACGTTTTTTAGGTCCAGTTAGGATTATAT
TTCCCATCAAAATAAATCCTCCTATTTTGACTCACTGTTATTAGTACCTG
ATTTGTCATCATCCCGCACTCCCTGATACTCAGTTTTAGTTCCAAATTTT
TATAGTGCAAGGTGTTAAACTCTGTATTCGGACAATATACCAAAACCTAG
ATAAACATAGTTTATACCAAGCACAATTCATGTAAAAATATATGTCTACA
CACAACTGTATACTATTTCCAACTTGGTGTACCTGCCTTACTTTCATCTC
CCATTATCTTACTAATTTTAAACCCATTTATTCTTTCATTTACCACACAC
CTTGCTTACCCCAATTATTTTATTCCTCTGCACAGTCTTGACAAACTTTC
CATATTATCCGTTTAATCCCCTTTTGCCCCCTACGATAATATTCCCCCTT
TGTAAATATACACTCTTTTTATCTACTCATCCTGTTTCCCCTTCTTTCAT
CTCACCTTCTTCTTTTCCCCTTATTCCGTATCCCCCCGTCCCCTTTTCCA
CCATCCCCTTCCTCATCTTTTTTCACCTCACACT
CCANCTCCACAATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACGTTTGACTTAAGC
TCCATCATTAAGATGTCTCACTGTCTATGCCCCAAGATCTAAATGAACTA
TTAAACTTTTCTGGTCCCAAGCATTTGAAACAGGGTCACTAAGCCTATAT
CTATACTTTTAGCAAGGTAAGTATTGAATCGTGTGTTCTGTAAAAGATAT
ACTTCTGTTTCAGTTCTGGAGGGATAACTACTTCATGGGTTTAGTATAAG
ACAATATCTGTGTACATATGTAATATATTTAGCTCAGCGATTATCTTCCC
TTCCTGTGAAATGGTCTTGTTTTGTGTCCCACACCTCCATTTCATTGGCT
CATTGCTCAAATATCCAAAATATTCACAGGCTGAATGTCATCTCCGATCC
CGGTGCATGAGATAGACCACATTATATATTTTCCACTATGATTTAACACA
CCATAGCCTAGTGCAGACAATATCCCTATGACTAAGAATGCATGATATAT
GCTCGAAAACCGATCCTTGCTTTTTATAAATAATAACCCCCCACAGTGTT
GGCACCCCCTTCTACCTCGCTCGCCTGTCTCGAATAAAAACCCAAACCCG
GCCCGCCCATTTGTTCAGACCTGTTTTCACAGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_f03.b1 MSMg01no087_f03.b1 CHROMAT_FILE:
MSMg01no087_f03.b1 PHD_FILE: MSMg01no087_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:24 2005
         (206 letters)



>mm_chr17_83003166_83003771
          Length = 606

 Score =  362 bits (187), Expect = e-104
 Identities = 199/203 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgtactcacattggggtatttttgcagatgctgataagaggaacttgtgtacc 63
           ||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ggaattctgtacggatattggggtatttttgcagatgctgataagaggaacttgtgtacc 347

                                                                       
Query: 64  atgggccacgttttttaggtccagttaggattatatttcccatcaaaataaatcctccta 123
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 atgggccacattttttaggtccagttaggattatatttcccatcaaaataaatcctccta 287

                                                                       
Query: 124 ttttgactcactgttattagtacctgatttgtcatcatcccgcactccctgatactcagt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ttttgactcactgttattagtacctgatttgtcatcatcccgcactccctgatactcagt 227

                                  
Query: 184 tttagttccaaatttttatagtg 206
           |||||||||||||||||||||||
Sbjct: 226 tttagttccaaatttttatagtg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 606
Length adjustment: 8
Effective length of query: 198
Effective length of database: 598
Effective search space:   118404
Effective search space used:   118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no087_f03.g1 MSMg01no087_f03.g1 CHROMAT_FILE:
MSMg01no087_f03.g1 PHD_FILE: MSMg01no087_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:24 2005
         (283 letters)



>mm_chr17_82878619_82879301
          Length = 683

 Score =  460 bits (238), Expect = e-134
 Identities = 262/270 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacgtttgacttaagctccatcattaagatgtctcactgtctatgccccaagatctaaat 60
           ||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||
Sbjct: 201 tacgtttgacttaagctccatcattaagatgtctcactgtcaatgtgccaagatctaaat 260

                                                                       
Query: 61  gaactattaaacttttctggtcccaagcatttgaaacagggtcactaagcctatatctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaactattaaacttttctggtcccaagcatttgaaacagggtcactaagcctatatctat 320

                                                                       
Query: 121 acttttagcaaggtaagtattgaatcgtgtgttctgtaaaagatatacttctgtttcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttttagcaaggtaagtattgaatcgtgtgttctgtaaaagatatacttctgtttcagt 380

                                                                       
Query: 181 tctggagggataactacttcatgggtttagtataagacaatatctgtgtacatatgtaat 240
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 381 tctggagggataactacttcatgggtttagtaggagacaatatctgtgtacatatgtaat 440

                                         
Query: 241 atatttagctcagcgattatcttcccttcc 270
           ||||||||||||| ||||| ||| ||||||
Sbjct: 441 atatttagctcagtgattaccttaccttcc 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)