BAC Information

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BAC

Clone NameMSMg01-088D08
Chromosome17 (Build37)
Map Location 91,943,836 - 91,944,201
singlet/doubletsinglet
Overlap genenone
Upstream geneNrxn1, EG668871, LOC668872, LOC627235
Downstream geneLOC100043741, LOC100043742, EG640442, LOC627395, LOC676141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088D08.T7 (MSMg01no088_d08.b1)MSMg01-088D08.TJ (MSMg01no088_d08.g1)
ACCAG307027AG307028
length708701
length of high quality
(start - end)
370 (45 - 414)233 (58 - 290)
definitionCHROMAT_FILE: MSMg01no088_d08.b1 PHD_FILE: MSMg01no088_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:36 2005CHROMAT_FILE: MSMg01no088_d08.g1 PHD_FILE: MSMg01no088_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATTTTATATGCCAGCTAAACCCAGATTGGTCTATTTACACAGAGG
TAGTTCAGGGCACTGACTGCTGTTTGACAGACAGGAATGTATTCTCTCAC
TATGGATTAGTGTTATGGTTTGCTGTTACAAAATAATGTTGTTAAAAACA
CAAAGGAAAACATAACTAGTTATAATAAAATGAATTTTATTTGAATAAAA
TTATAAAATATTTTTTAAAATAGAATTTTGATATTCAGTTCAATAAGTGC
TTCTTTATTAATATGAAATTAAAGCTTCAACAGTGGGCTGAGTCAGATTG
CAATTTTAAAACTGAGGCATATATACCATATCCTCAAATATCTACAGCAG
CAACAATACTTGGCATTACATTTTTATTTTCGACAGCATTTGTATGACCA
ACTAATATTACTATAGTTTGTTGTCTTTGTTCACTATAAAATAAATATAA
CCCACAATGGAAAATGCTATAAGATCTTAATTCATAACATCCTGTAAATC
CAGCCACACTATGAGAAGAACAAACCAATGGATAATATGAGTGTTTGACA
ATGAAGATTTTCAACCTTATAGGTTCAGCCAATATCTCTCCCTTTATCAT
ACAAAGATTATTTCCCCCATCTTTATACAGATATGACCCCTAACTTTCTA
GAATCCCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCAGAAAGTCTTTAATTCCTTTATTTATTTCTTCCAGGTTCACA
TTATCATTGAATACGTGTTCTTCAGTTTCCATGAGTATGTTGGCTTTTTG
CTGTTTTTGTAGTTATTGATGTTAAGTCTTATACTGTGCTGATCTGATAG
GATGCATGGGATTATTTCTATCTTATTGTATCTCTTGACACTTGCTTTCT
GTCTGATTATATGGCGGATTTTGAGGTTTCCATGAGGAACTGACAAGAAT
CTATATTCTTTTGCTTTACGGTAAAGTGCTCTGATGATGTCTGTTATACC
CATCCCACTCATAATGTCTGTTACTTCCATCTCGTTTTTGCTTACGTTCT
GCTTCCATGTACTTTGTTGAGAGCAGTGATTGAAGTTCCCCCCTATCACT
GTACGATATTTTTATGTGTGTTTTGAGCTTTAATTAAATTTCTTCGATAA
ATTTGGCTTCCCCTGTGCTTGACCCATATATCGTTTTCATTTGCCACTTC
ATCTCGTTGCCCCTTCCCGTTTGATGTTCATGAATTCCTTCTCCCCTTTT
CTTCTTTTACTTACCTTTCGCTTTGATAATTCTATCTATTTCTGCCCCTC
TTATCTTCTCTTTTCCTTTCTTACTTTTTCTCCCCCCTGTTCCTCTTTTT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_d08.b1 MSMg01no088_d08.b1 CHROMAT_FILE:
MSMg01no088_d08.b1 PHD_FILE: MSMg01no088_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:36 2005
         (370 letters)



>mm_chr17_91943632_91944401
          Length = 770

 Score =  661 bits (342), Expect = 0.0
 Identities = 360/366 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccattttatatgccagctaaacccagattggtctatttacacagaggtagttcag 64
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccattttatatggtagctaaacccagattggtctatttacacagaggtagttcag 264

                                                                       
Query: 65  ggcactgactgctgtttgacagacaggaatgtattctctcactatggattagtgttatgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggcactgactgctgtttgacagacaggaatgtattctctcactatggattagtgttatgg 324

                                                                       
Query: 125 tttgctgttacaaaataatgttgttaaaaacacaaaggaaaacataactagttataataa 184
           ||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 325 tttgctgttacaagagaatgttgttaaaaacacaaaggaaaacataaatagttataataa 384

                                                                       
Query: 185 aatgaattttatttgaataaaattataaaatattttttaaaatagaattttgatattcag 244
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatgaattttatttgaataaaactataaaatattttttaaaatagaattttgatattcag 444

                                                                       
Query: 245 ttcaataagtgcttctttattaatatgaaattaaagcttcaacagtgggctgagtcagat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttcaataagtgcttctttattaatatgaaattaaagcttcaacagtgggctgagtcagat 504

                                                                       
Query: 305 tgcaattttaaaactgaggcatatataccatatcctcaaatatctacagcagcaacaata 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgcaattttaaaactgaggcatatataccatatcctcaaatatctacagcagcaacaata 564

                 
Query: 365 cttggc 370
           ||||||
Sbjct: 565 cttggc 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)