Query= MSMg01no088_k11.b1 MSMg01no088_k11.b1 CHROMAT_FILE:
MSMg01no088_k11.b1 PHD_FILE: MSMg01no088_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:12 2005
(489 letters)
>mm_chr17_77800915_77801804
Length = 890
Score = 768 bits (397), Expect = 0.0
Identities = 467/497 (93%), Gaps = 15/497 (3%)
Strand = Plus / Plus
Query: 1 cacgagctcaggtcggtcactgataggctgacaagttcagatcatgagggacagtctagc 60
|||||||||||||||||||| |||||||||||| || ||||||| |||||| ||||||||
Sbjct: 201 cacgagctcaggtcggtcaccgataggctgacaggtccagatcaggagggatagtctagc 260
Query: 61 ctggcaggcagcccatgcatgcagcctcactgtgcatgctggggcaaggcagtaaacaag 120
|||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 ctggcaggtagcccacacatgcagcctcactgtgcatgctggggcaaggcagttaacaag 320
Query: 121 tgggtttcatggggcctgtg-cctgaacccgcttcccgcagaaaataaaattgaaatttt 179
|||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||
Sbjct: 321 tgggtttcatggggcctgtggcca-aacctgcttcccgcagaaaataaaattgaaatttt 379
Query: 180 ctctcttggacctacttgacacatgctatttcctaagaacatacaataggtaggtttatg 239
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 380 ctctcttggacctacttgacacatgctatttcctaagaacatactataggtaggtttatg 439
Query: 240 gataaaggatagaaatattatggtctggttttgattggaagcaggaa-tatgtctgactg 298
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 440 gataaaggatagaaatattatggtctggttttgattggaagcaggaaatacctctgactg 499
Query: 299 tacatgtcaactttgataaatcacaagtggatgtttagaatgct------acccccctaa 352
|||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 500 tacatgtcaactttgataaatcacaagtggatgtttagaatgctgcaaaaa------taa 553
Query: 353 atatatggaaataaagaaaagactatcatgactgatgaaaattatcacttaacgatcgtc 412
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 atatatggaaattaagaaaagactatcatgactgatgaaaattatcacttaacgatcgtc 613
Query: 413 tctgacaaggcatgaagaaagaaggggtaatggcatatgtcatttgagaagggatgccca 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tctgacaaggcatgaagaaagaaggggtaatggcatatgtcatttgagaagggatgccca 673
Query: 473 gttgtaacatctctgta 489
|||||||||||||||||
Sbjct: 674 gttgtaacatctctgta 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 890
Length adjustment: 10
Effective length of query: 479
Effective length of database: 880
Effective search space: 421520
Effective search space used: 421520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no088_k11.g1 MSMg01no088_k11.g1 CHROMAT_FILE:
MSMg01no088_k11.g1 PHD_FILE: MSMg01no088_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:12 2005
(237 letters)
>mm_chr17_77968448_77969084
Length = 637
Score = 414 bits (214), Expect = e-120
Identities = 229/234 (97%)
Strand = Plus / Minus
Query: 1 taaacatgcctgaatatatacaaaataagagttggtaaattgaaaaatatggggaaaatg 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 434 taaacatgcctgaatatatacaaaataagtgttggtaaattgaaaaatatggggaaaatg 375
Query: 61 ttagcaaatttaaagctgggaaaaattctaaatcatgtccataaagatattctgtaaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 374 ttagcaaatttaaagctgggaaaaattctaaatcatgtccataaagatattctataaatg 315
Query: 121 aatagtgtgaataaagaataaagatgcccacagctgcaggctgctacatatgctatcccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 314 aatagtgtgaataaagaataaagatgcccacagctgcaggctgctacatatgccatcccc 255
Query: 181 agactccactgctattcagtgtctataattccaggcctttgctgtcatcttcta 234
||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 254 agactccactgctattcagtgtctatatttcccggcctttgctgtcatcttcta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space: 143184
Effective search space used: 143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
