BAC Information

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BAC

Clone NameMSMg01-088N17
Chromosome17 (Build37)
Map Location 53,321,933 - 53,322,237
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672987, EG328839, Kcnh8
Downstream geneLOC668506, EG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826, LOC100043471, EG668523, LOC629121, Gm324, Sult1c1, LOC100043829, EG435531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088N17.T7 (MSMg01no088_n17.b1)MSMg01-088N17.TJ (MSMg01no088_n17.g1)
ACCAG307504AG307505
length719771
length of high quality
(start - end)
314 (35 - 348)161 (72 - 232)
definitionCHROMAT_FILE: MSMg01no088_n17.b1 PHD_FILE: MSMg01no088_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:28 2005CHROMAT_FILE: MSMg01no088_n17.g1 PHD_FILE: MSMg01no088_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGGGT
GGACTTCGGCCAGGCATTGGAACAAGAAGATTAGGCAAAGACCCAACTCC
AGGGGATAAGCGCCCATAACGGAGCACAAGCTGGCCTTTGGGTAGTGGGC
TGGTAAGAGAGCAATCTTGGAGCTCTGGAGAGTCAGAGCCAGCATTTGTG
GGAGAGGTGTTGCCTAAGAGAAACATGTTGTCATGGTCTTGGGCTATGTG
CTGGGCTAGGAACAGACAGAGACAGCTGATGTCAGCTCATAGCCAGATAC
AGCGTGGGTTCATTTTAAAATTACTTGCTACAGGATATTGGCCAAAAAAG
GAGAGGGGAACAGAACAGAACAAACTCAGAGCAATTCCACTAAAATAGAA
GACCAGCTTGTTCACTTTCTCCATCTCCATTCAATATAGTACTCGAAGTT
CTAACTGAATCAATAAAACTGTTGAATGAGATCTTGTGCATACAAATTAT
AAAGGAAGAAGCCTAAGTGTCTCTACTTGCAGATGATATGATAGTATACA
TAGTGTAGTGGCTATTCCTGGTTGTCAACTTGACTATATTTGGATTGAAC
TACAATCCCGAATTGTAAGGCTTCCCTGTGTACCTTATCTGAAGGCTTGG
AGACCCTTATCTGGTATTTGTTTTGTAGATCTTGAGCCATTTTGGTTATG
TATTCCAGATATTTGTTTA
CATGACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCATACTGTTTCCTTTAGTGGCTACATCA
TTTTGCATTACTGAAAATACCCGTATAATAATCCTAATCTCTCTACATTT
TTATGGCACTTGTTGCCTTATTTGTGTATGGATATATATATATATATATA
TATATATATGTATGTATATGTATATGTATATGCATATGTGTCCTTGTCTG
TCGCCCACACACCTACTCCTCTTTTTTTTACTTACATATTTATTTTTCTT
CCCATAATACCGATATTTCTTTTTTTTTTCCTTATTCTTCCCCTTTAACC
CATATCTCATTCTCTCTCCCACCTTCATCCATCTTCTCTTACATTTCCCT
CCCTTCCATTCTTTTCCCCCTTATCCACCTTCCACCCTATTCCTCCTTTT
TCTTTTCCTCTTTTTTTCCCTTTCACTTCTATTCTCCTCTTTACTTATTT
ACTTTCCTTTTCTATTTCCCCCCCTACTCTCCTTCTCTTTATACCTCTCA
TTTACCCCCTTCTCCTTTTTCTTTCCTCCCCCCCCCCCTTTTCTTCTTTT
CTTTCCCTCCTTCTCCTTCTTTATTCTTTAGTTATTTTTCTCTATTTTTT
TCCTTTTTCCCCTTCTCGTTCTCCTCCCTCTCTCCTCCTTTTCCCCTCTA
TTCTCTATTTTTTTTTCTTCCACCACCTCCCTCTTTTTTTCTTTCCCCCC
CCTCTTCATTTCTCTCTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_n17.b1 MSMg01no088_n17.b1 CHROMAT_FILE:
MSMg01no088_n17.b1 PHD_FILE: MSMg01no088_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:28 2005
         (314 letters)



>mm_chr17_53321724_53322437
          Length = 714

 Score =  505 bits (261), Expect = e-147
 Identities = 294/309 (95%), Gaps = 8/309 (2%)
 Strand = Plus / Plus

                                                                       
Query: 10  ccagggtggacttcggccaggcattggaacaagaagattaggcaaagacccaactccagg 69
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ccagggtggaattcggccaggcattggaacaagaagattaggcaaagacccaactccagg 269

                                                                       
Query: 70  gga----taagcgcccataacggagcacaagctggcctttgggtagtgggctggtaagag 125
           |||    |||     ||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 270 ggagaagtaa----tcataatggagcacaagctggcctttgggtagtgggctggtaagac 325

                                                                       
Query: 126 agcaatcttggagctctggagagtcagagccagcatttgtgggagaggtgttgcctaaga 185
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 326 agcaatcttggagctctggagagtcagagccagcatttgtgggagaggagttgcctaaga 385

                                                                       
Query: 186 gaaacatgttgtcatggtcttgggctatgtgctgggctaggaacagacagagacagctga 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gaaacatgttgtcatggtcttgggctatgtgctgggctaggaacagacagagacagctga 445

                                                                       
Query: 246 tgtcagctcatagccagatacagcgtgggttcattttaaaattacttgctacaggatatt 305
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| 
Sbjct: 446 tgtcagctcatagccagatacagcgtgagttcattttaaaattacttgctacaggatata 505

                    
Query: 306 ggccaaaaa 314
           |||||||||
Sbjct: 506 ggccaaaaa 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)