BAC Information

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BAC

Clone NameMSMg01-088O06
Chromosome17 (Build37)
Map Location 10,906,560 - 10,907,076
singlet/doubletsinglet
Overlap genePacrg
Upstream geneQk, LOC675815
Downstream genePark2, LOC100041113
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088O06.T7 (MSMg01no088_o06.b1)MSMg01-088O06.TJ (MSMg01no088_o06.g1)
ACCAG307530AG307531
length750677
length of high quality
(start - end)
125 (136 - 260)519 (56 - 574)
definitionCHROMAT_FILE: MSMg01no088_o06.b1 PHD_FILE: MSMg01no088_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:31 2005CHROMAT_FILE: MSMg01no088_o06.g1 PHD_FILE: MSMg01no088_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTAATATNAANTTTTTTTTAAAAATTATAGTTTCGTCTACCGCCCCCCC
TCCGTCCGCCTNNTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTCC
CAAAGAGGATCCGCGGAATTCCTCTTGCCTTATATTTTTCTTCTCCCTAT
TCCCTTTTCTCTGTGTGCCTATGTATGTGTGGACCCCAGAGGTCAACATC
AAATGTCTTCTTCAGTTGATTTCCATCTTAGTTTTTTTGAGGCAGGGTCA
TTCACAGACTGGTCTGGCCAGTCAAGTCCCAGGAATTCTCCATTGATAGG
TTTATAGGAATACATTGTCATGCCTAGCCTTTTGTGTGCTTGACTAGGGA
TTCAAACTCAAATGCTCATGCTTGTGTGGCATACTGTGTACCAAGTGGGC
CAGCTCCTCAGCCCTGATTTCCTGTTATTCTCCCCCCTAGCATCATGAAA
CAACCTTTATTTTTGAGAGATAGATGTTGCCTGGCCGTGCATGTGTCAGA
ATCTGCATATTGGTTACTGACACAGGTAGTATTTTTGGTATGGGCTATCA
TGAAATGTCTGCTTGGAGTACCCTGATGCACATAGCCAGTCCCTGTTTGT
TAGTATAGCTTTTCATTACAGAGTCCCTCTCACCCATGACAGATCCATGG
GATGCCCCCAGGCTTTTTACAACTTGTTTCGGAGTGTACTTCATCCACTC
CTACCGTAGACAATTTATCTATGGGCTCCTTAATGATCTGGCGACCCCCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXATTACTGAGACCCACGATGCTCTCTTCTCAGTGGGCTTGCCACCC
TCTTTGCCCAAATCAGGCAACTATTGTTTGCAGTGTTGTGCTGAGAGGAT
AAATGGATGCTACACCCAGGCTTTTCCCTTGTTTTGTAGAACAGTATTTT
AATGATACACACAAGGAGAGTTCCAATGAGCAGTAAGAAGTGGTAATGAG
CAGTTGATTGATTCTAGTTGCCTTTGATCATGTCAGTGTGGAGATGGATT
TCCCATGAAGCCAAAAGAGACACTCAGTGGAGTTACCCACTTCTCAGAAC
TTGGAGGGCATAGGCAAGATAGCCACATTTCTATCAAAGTTTATATCAAG
AGAAAGATCTGCTACAGTTGGTTCATGCGTCTGTCTTGTTCTAATCACTA
ATGTCTCTTCCAGGGCACTTCTCACTTGTTTAGTAATTATTGGCATTTCA
GAGATCTGGGCTCAGGGAAACCGAATTGGAGGTGAAATTTTTATGTGACT
GATTTTGAGGGTTACTCTTCCTGTGTATGCCATTCACAGCGTGTCTCTAT
ATAACAGACTATGCTGCCTACATAGACGGTCAAAGGCAAGTCTGTCTTAG
ATGTGTGAGAATTATAAAATAAATTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_o06.g1 MSMg01no088_o06.g1 CHROMAT_FILE:
MSMg01no088_o06.g1 PHD_FILE: MSMg01no088_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:31 2005
         (519 letters)



>mm_chr17_10906360_10907277
          Length = 918

 Score =  948 bits (490), Expect = 0.0
 Identities = 511/518 (98%), Gaps = 1/518 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attactgagacccacgatgctctcttctcagtgggcttgccaccctctttgcccaaatca 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 717 attactgagacccacgatgctctcgtctcagtgggcttgccaccctctttgcccaaatca 658

                                                                       
Query: 61  ggcaactattgtttgcagtgttgtgctgagaggataaatggatgctacacccaggctttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ggcaactattgtttgcagtgttgtgctgagaggataaatggatgctacacccaggctttt 598

                                                                       
Query: 121 cccttgttttgtagaacagtattttaatgatacacacaaggagagttccaatgagcagta 180
           ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 597 cccttgttttgtagaacagtattttaatggtacacacaaggagagttccagtgagcagta 538

                                                                       
Query: 181 agaagtggtaatgagcagttgattgattctagttgcctttgatcatgtcagtgtggagat 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 agaaatggtaatgagcagttgattgattctagttgcctttgatcatgtcagtgtggagat 478

                                                                       
Query: 241 ggatttcccatgaagccaaaagagacactcagtggagttacccacttctcagaacttgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ggatttcccatgaagccaaaagagacactcagtggagttacccacttctcagaacttgga 418

                                                                       
Query: 301 gggcataggcaagatagccacatttctatcaaagtttatatcaagagaaagatctgctac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gggcataggcaagatagccacatttctatcaaagtttatatcaagagaaagatctgctac 358

                                                                       
Query: 361 agttggttcatgcgtctgtcttgttctaatcactaatgtctcttccagggcacttctcac 420
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 agttggttcat-cgtctgtcttgttctaatcactaatgtctcttccagggcacttctcac 299

                                                                       
Query: 421 ttgtttagtaattattggcatttcagagatctgggctcagggaaaccgaattggaggtga 480
           ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 298 ttgtttagtaattattggcatttcagagatctgggctcagggacactgaattggaggtga 239

                                                 
Query: 481 aatttttatgtgactgattttgagggttactcttcctg 518
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 aatttttatgtgactgattttgagggttactcttcctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 918
Length adjustment: 10
Effective length of query: 509
Effective length of database: 908
Effective search space:   462172
Effective search space used:   462172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)