BAC Information

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BAC

Clone NameMSMg01-091F17
Chromosome17 (Build37)
Map Location 60,855,938 - 60,856,256
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043549
Downstream geneLOC433129, EG620725
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091F17.T7 (MSMg01no091_f17.b1)MSMg01-091F17.TJ (MSMg01no091_f17.g1)
ACCAG309329AG309330
length695784
length of high quality
(start - end)
418 (49 - 466)39 (82 - 120)
definitionCHROMAT_FILE: MSMg01no091_f17.b1 PHD_FILE: MSMg01no091_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:50 2005CHROMAT_FILE: MSMg01no091_f17.g1 PHD_FILE: MSMg01no091_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TACATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGCTACCACTCCTAGGCCAGAGTAGTCAGCTAGAGTCAAGCC
CACTAACTTCAAAATGGTTGAAAAAATGACTGGATACATCCTAAGAATGT
CCCAGGATGAGACTGTAAGATAATTAATATAAATAAACAGAATCTTTTCA
TGCCTTATTAAACTATGCTAATGTTTTGCTTTAGTTTTTGTTTCTTAGCT
GTGAACTCCTGGGATTACTTAATATTTTCTCATAATAGATAACAATGAGA
TTTTGGAGTCTTTTTCCAAGGTTATATCCACAGCTCTGTTTCTCATTTTG
AGGTAAGGCTTCATGACTTTAAGTTGTCAGCTGCCTGTCTTAAGTAGAAT
ATATTTCATCATACATCGATAATATACTGCTGACCCTTAAGTGTTTTTAA
GATTTAAATATCTGTTTAGGAGAGTTTATCCTCCAAAGAGTAAAAACGTG
CTTCACAAAGAGTAAACAAATGTATCTTACAGGCTAAAATCAGAAAATCT
CAAGTACATAGGGTTACAGAAAGTACTACAACTAGGTATTTCCCTATGAA
CTCCCAGGCAGGTAGTACCTGCGAACTATCTAATACAGTGAAAGTCATTG
CCATTGCTGCTAGGTGCATTCCCGAAGTACTTTCATATACTACGT
TACACATCAATGACAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGTTTCCTTCCTCTCCAC
AGAGCTGAGAATTTTTGTTTGTTTGTCCCCATTAGTTGTTGTTGTTGTTG
TAGTTGTTGCTCACAACACCCCTATTTTTCTCCCCTCCCCCCTCCCTTCT
TTTTTTCTACTCCACACACCTTTCCTCACATTTTATCCTCAATACCCTCC
TCTATCCCCTATCTCTCTTTTACTTCTTTCTTCTTCTTTCCTTTCCCCTT
CTTCCCTTTTTCCCCCCCTTCCCCTTCCACCTTTTAACCCCTTTTCTCTC
CCCTTTCCCAAACAACACTAATTCCCCCTTTTTTTTTTTCCTACCCGCCC
CCCCCTATATTCCCCAACTTCTATCATATCTCCCACCTATTTTTCCCCCC
CCACTTCAAAAAACCCTCTCCCCATTCCTTCTCCCCCCATTCCCCCCTTT
CTAATCCTCTATACTACCCTACCTTACCACCCAACACATAATTTCACTCT
ATTACTCCCTACTACCCAAATCACTTAACTATCCATGATCTCCTTCTTCT
ACATCCCCCTTTTCCTTCTACCCCCCTTTTCCCACCTTCTCCCCCTTATA
CCCCTATTTATTCCTACACCTTTTAAATCTACTCTTTTCCTTTATTCCCT
CTTTCCCTTTATCTTTTCCCTACACCACTTCCCCATTATTTATCCCACCT
TCCTTACCACATCCCTTCTCTATCTACCACACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_f17.b1 MSMg01no091_f17.b1 CHROMAT_FILE:
MSMg01no091_f17.b1 PHD_FILE: MSMg01no091_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:50 2005
         (418 letters)



>mm_chr17_60855938_60856755
          Length = 818

 Score =  594 bits (307), Expect = e-174
 Identities = 316/319 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgctaccactcctaggccagagtagtcagctagagtcaagcccactaacttcaa 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gaattctgctaccagtcctaggccagagtagtcagctagagtcaagcccactaacttcaa 260

                                                                       
Query: 65  aatggttgaaaaaatgactggatacatcctaagaatgtcccaggatgagactgtaagata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aatggttgaaaaaatgactggatacatcctaagaatgtcccaggatgagactgtaagata 200

                                                                       
Query: 125 attaatataaataaacagaatcttttcatgccttattaaactatgctaatgttttgcttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 attaatataaataaacagaatcttttcatgccttattaaactatgctaatgttttgcttt 140

                                                                       
Query: 185 agtttttgtttcttagctgtgaactcctgggattacttaatattttctcataatagataa 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 139 agtttttgtttcttagctgtgaactcctgggattacttaatattttctcataatggataa 80

                                                                       
Query: 245 caatgagattttggagtctttttccaaggttatatccacagctctgtttctcattttgag 304
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 79  caatgagattttggagtcttttcccaaggttatatccacagctctgtttctcattttgag 20

                              
Query: 305 gtaaggcttcatgacttta 323
           |||||||||||||||||||
Sbjct: 19  gtaaggcttcatgacttta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)