BAC Information

Click to search

BAC

Clone NameMSMg01-091G19
Chromosome17 (Build37)
Map Location 62,878,825 - 63,007,946
singlet/doubletdoublet
Overlap geneEfna5
Upstream geneLOC100043560
Downstream geneFbxl17, Ppia-ps17_1026.1, LOC638867
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091G19.T7 (MSMg01no091_g19.b1)MSMg01-091G19.TJ (MSMg01no091_g19.g1)
ACCAG309380AG309381
length696691
length of high quality
(start - end)
234 (130 - 363)349 (126 - 474)
definitionCHROMAT_FILE: MSMg01no091_g19.b1 PHD_FILE: MSMg01no091_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:56 2005CHROMAT_FILE: MSMg01no091_g19.g1 PHD_FILE: MSMg01no091_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,878,825 - 62,879,056)(63,007,598 - 63,007,946)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTCAGTTCTCGAGACTTAAAGCCTGTGTGTTAACTATGACTCTTCAGT
GCCTCTTATACACCCTGTTCTTTCCGACCACTGAGTTATAAGGTGGACAG
CCAGCAGAAGTCCTCGCCTTCCATCACATGCATTTTGAGTAAATAAGACC
ATCGGAAAGTCATAGTCTCAAATAGTGACTAGAAGCACTGTGTCTGTAAG
AACAACACATGTGGGACCATCAAGAACATCTCTAGGGAGAAGATGGAATA
AGAACTGAATGATGGAGAAGAAGGCCTGTGTTTGCAACTTTAGGACCAGT
GTGTATTAAAGTTTATGAAACAGCGAACCTGTGAGCAACTCGGGGCAAGC
TCTGCACAGTGAGAGGCCGAGAGCAGCCTGAGGTCAGACCGGAGACAACA
CCGGTCTGTTCGAGGTCCTGATCCCTGGCCAAGTTGTGCAGAACAATGTA
TGTCATGACAACAGGTGAGGGTTTTATTTTCAGAGCAATGAGAGCCACTT
TATATTAATGAAGACACAATTCAAGTTTATTAAAGACTCTAGGTAATGTG
GGGGATAAAAGATAAATAGAAGTCCCTAATTTAGGATCCTTGGGACTTTT
TTTTTGATTTGTTCATCAACTTAAATTTCAATTTCCTCATGTTCGG
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTTATTGGAAACCAGGGCGTTCTAGGGC
TGAGAAGATAACTTTTTCAACCCACCATCAGCTCAGGTATCTCACTTAAC
ATTTATCAAGTAGTTAAAAAGCATCAAATCACTATTTTCCACAACGCTCT
CCTTGAGTTGGTGACAAAAGAAGAGGGAACGAAGAGTGGCCTAGAATTGT
GCCAGAGACTACCATCCCACAGCGGATAGAGTGGCATGCTTAGAAGTGAG
CAGCTTGGTGGGTGGTTTATTGGTCTGATAGACTCCCACGTACCATGATG
CTAACCAAGTCATTCAGTCTGTTCCTTGGACTTTGGCTGTATAAGCTACT
TGGTGATTTTTTTTTCTGGACCTACTCTTAGTCAATCTGTATATATGCAT
CAGGGATTCTGCCCCATGTACTTAAGAGGCCCTAAAACTCCAGATGGCTT
AAAGCCTGCTCCCCAGCTTTGTGAGACTCTCCTGGGCAGCAGATGGAGTG
AGAAAGAGTCTATTCTGCATTGTAAACGTGAACCACGTTAAGACCACTCT
GAGTGCCAGATGTTAACTCTTTATTTTTGTTTCAAAATCCCCGTTTGAAA
ACCATTTGACCTGATCTGCGATGTGCCCGCCCTGTTACGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_g19.b1 MSMg01no091_g19.b1 CHROMAT_FILE:
MSMg01no091_g19.b1 PHD_FILE: MSMg01no091_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:56 2005
         (234 letters)



>mm_chr17_62878625_62879258
          Length = 634

 Score =  449 bits (232), Expect = e-131
 Identities = 232/232 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgagttataaggtggacagccagcagaagtcctcgccttccatcacatgcattttgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgagttataaggtggacagccagcagaagtcctcgccttccatcacatgcattttgag 260

                                                                       
Query: 61  taaataagaccatcggaaagtcatagtctcaaatagtgactagaagcactgtgtctgtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaataagaccatcggaaagtcatagtctcaaatagtgactagaagcactgtgtctgtaa 320

                                                                       
Query: 121 gaacaacacatgtgggaccatcaagaacatctctagggagaagatggaataagaactgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacaacacatgtgggaccatcaagaacatctctagggagaagatggaataagaactgaa 380

                                                               
Query: 181 tgatggagaagaaggcctgtgtttgcaactttaggaccagtgtgtattaaag 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatggagaagaaggcctgtgtttgcaactttaggaccagtgtgtattaaag 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no091_g19.g1 MSMg01no091_g19.g1 CHROMAT_FILE:
MSMg01no091_g19.g1 PHD_FILE: MSMg01no091_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:56 2005
         (349 letters)



>mm_chr17_63007398_63008146
          Length = 749

 Score =  652 bits (337), Expect = 0.0
 Identities = 346/349 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catcagctcaggtatctcacttaacatttatcaagtagttaaaaagcatcaaatcactat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 catcagctcaggtatctcacttaacatttatcaagtagttaaaaagcatcaaatcactat 490

                                                                       
Query: 61  tttccacaacgctctccttgagttggtgacaaaagaagagggaacgaagagtggcctaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tttccacaacgctctccttgagttggtgacaaaagaagagggaacgaagagtggcctaga 430

                                                                       
Query: 121 attgtgccagagactaccatcccacagcggatagagtggcatgcttagaagtgagcagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 attgtgccagagactaccatcccacagcggatagagtggcatgcttagaagtgagcagct 370

                                                                       
Query: 181 tggtgggtggtttattggtctgatagactcccacgtaccatgatgctaaccaagtcattc 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 369 tggtgggtggtttattggtctgacagactcccacgtaccatgatgctaaccaagtcattc 310

                                                                       
Query: 241 agtctgttccttggactttggctgtataagctacttggtgatttttttttctggacctac 300
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 agtctgttcctccgactttggctgtataagctacttggtgatttttttttctggacctac 250

                                                            
Query: 301 tcttagtcaatctgtatatatgcatcagggattctgccccatgtactta 349
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tcttagtcaatctgtatatatgcatcagggattctgccccatgtactta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)