BAC Information

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BAC

Clone NameMSMg01-091K10
Chromosome17 (Build37)
Map Location 39,212,411 - 39,212,510
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr131, Olfr132, Olfr133, Olfr134, Olfr135, Olfr138, Olfr137, Olfr762-ps1, Olfr136, LOC626985, LOC100043297
Downstream geneLOC100043300, EG668200, LOC672857, LOC627695
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091K10.T7 (MSMg01no091_k10.b1)MSMg01-091K10.TJ (MSMg01no091_k10.g1)
ACCAG309543AG309544
length712702
length of high quality
(start - end)
100 (192 - 291)220 (76 - 295)
definitionCHROMAT_FILE: MSMg01no091_k10.b1 PHD_FILE: MSMg01no091_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:14 2005CHROMAT_FILE: MSMg01no091_k10.g1 PHD_FILE: MSMg01no091_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTCGTTCACATGAATTAAAGAACATATCTTAGTTGAAGCAAGCAATGCAT
GGTACACAATTTTTCCCCAAAATATTAATTAAGTTTGGTCTACACAAGAA
ATAATATGTGACAAAAAATGTAAAAGGAAAACAATGGAAGTGTTACCATG
TACTGCCACTGTAGTTTCATTTTGCCAACTTTACCTCTGATAAAGATGAT
ATATAAGCTATGGTACTTTACTGAACTATCAGTTGTGTACAAGAAATGAG
AGAATTCCTAATTTATTTCTGCACATGTCTGTTTGTCTTCAACAGTGAAA
TTTGTAACGGAAGACAATTACAAATATTTCATCATGCATTTTCACAGTAT
TATACCACTACCTGCATAGCTATTCTTTGCTTATATCTTTCATTGATATT
GCTCATGAACCTCTGTACTATGACTGTCACACCTTTTTTACTTAGACTTA
TCCCCACCCCCCATAATAGCCTTCTTCTTATAGACCTTTATAATTTATGA
CCAATCCTTTTTAACGCCTAACTTATATTTCACTTTGCACTTCATGACTA
CATTCTTTCCCATCTATCAATACTTCTATATAATCCAAGCTCTCTCCATT
CCTCCCCTACAACATCCCCTATTCCCCACTTTTCCACTTATCTCACAACC
CACACCCATTCA
ATTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGGTAATATTGAAGGGATTTTTG
TGTTCTCTTTTTATTGTCCCTACCTGTTTACCTGTGTTTTCCTGTATATC
CTTAAGGGAGTCATTTGTGTCCTTCTTAAAAATCCTCTACCATCATTCTG
AGACATGATTTTAAATAGGAATCTTGCTTATCCTGTGTGTTGGGTTATCT
AGGACTTGCTGTGTCGGGAATACTAGGTTGTGGTAATGCCAAGTAGTCTT
GGATTCTTTTGATAATACTCTTGAGTTTGCCTTTTGCTGGCTGTTAATGT
CTGGTGTTGGAAGTTCTTGCTGCCTCTGACTGTAGCTTGCTCCTTCTGCG
AATATGTAAGCCTCTGTCAGCAGTCCCGCGATACTAGCTCTCTCCTGCCT
AGACAGAGAGCTGTCCAACTGCCCCACTTCTGTTACAATTTCTGCGTGGT
AGTACCCTGTCCATTCTGCTGTGTTACCTATGCACCCTATGTATCCTTGA
TTTCCTATATGACCTCCCCGACCTTCTTCTACCGCCTGTTATGTAACGTA
TTGCTTTTATCTTCAGTCATCTTCTTTGTCAATGTCCCCTATAACAATCC
TGTCTTTATCTCTCACTCATGCTCCTTAATCGCCGCCCAGAATTCCTGCT
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_k10.b1 MSMg01no091_k10.b1 CHROMAT_FILE:
MSMg01no091_k10.b1 PHD_FILE: MSMg01no091_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:14 2005
         (100 letters)



>mm_chr17_39212211_39212710
          Length = 500

 Score =  170 bits (88), Expect = 2e-47
 Identities = 97/100 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttaccatgtactgccactgtagtttcattttgccaactttacctctgataaagatgata 60
           ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 gttaccatgtagtgccactgtagtttcattttgccaactttgcctctgataaagatgata 260

                                                   
Query: 61  tataagctatggtactttactgaactatcagttgtgtaca 100
           |||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 tataagctatgggactttactgaactatcagttgtgtaca 300


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 100
Length of database: 500
Length adjustment: 8
Effective length of query: 92
Effective length of database: 492
Effective search space:    45264
Effective search space used:    45264
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)