Query= MSMg01no095_a01.b1 MSMg01no095_a01.b1 CHROMAT_FILE:
MSMg01no095_a01.b1 PHD_FILE: MSMg01no095_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:53 2005
(638 letters)
>mm_chr17_73474861_73475898
Length = 1038
Score = 1137 bits (588), Expect = 0.0
Identities = 621/632 (98%), Gaps = 2/632 (0%)
Strand = Plus / Plus
Query: 8 gaattctctgttttctcgacca-agacctcatttcttaatctttgtgctgagccaactgc 66
|||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 208 gaattctctgttttct-gaccacagacctcatttcttaacctttgtgctgagccaactgc 266
Query: 67 cattcttgctttagccattaaaaccatcctctgaactggcaggtgtgatctttgcattta 126
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cattcttgctttagggattaaaaccatcctctgaactggcaggtgtgatctttgcattta 326
Query: 127 tctcattttgttttgagacagggtctgatatgaagcataagacacatgtgtatatccatg 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tctcattttgttttgagacagggtctgatatgaagcataagacacatgtgtatatccatg 386
Query: 187 tgctggaattacatgaatgggctacagaacttcaccatcatttttgagctcagagcttca 246
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 387 tgctggaattacatgaatgggctacagagcttcaccatcatttttgagctcagagcttca 446
Query: 247 gttgctcccctattgcaggataataattgtaccggctggttttgtgtgtcaacttgacgc 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gttgctcccctattgcaggataataattgtaccggctggttttgtgtgtcaacttgacgc 506
Query: 307 aggctggagttatcacagagaaaggagcttcagttggggaaatgcctccatgagatccag 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aggctggagttatcacagagaaaggagcttcagttggggaaatgcctccatgagatccag 566
Query: 367 ctgtgggacagtttctcaattagtgatcaagcagggagagccccttgtgggtggtaccat 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ctgtgggacagtttctcaattagtgatcaagcagggagagccccttgtgggtggtaccat 626
Query: 427 ctctgggctggtagtcttgggttctataagagagcaggctgagcaagccaggggaagcaa 486
|||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||
Sbjct: 627 ctctgggctggtagtcttggattctataagaaagcaagctgagcaagccaggggaagcaa 686
Query: 487 gccagtaagaaacatccctctatgggatccagaagatgatgagtggaggtgtaagttgta 546
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gccagtaagaaatatccctctatgggatccagaagatgatgagtggaggtgtaagttgta 746
Query: 547 tccccaacttggttcctggtcatgatgttttatccaggaatagaaactctggctaagaca 606
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 747 tccccaacttggttcctggtcatgatgttttatccaggaatagaaaccctggctaagaca 806
Query: 607 atacctgtactctttatgcagtcacttaagtc 638
||||||||||||||||||||||||||||||||
Sbjct: 807 atacctgtactctttatgcagtcacttaagtc 838
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no095_a01.g1 MSMg01no095_a01.g1 CHROMAT_FILE:
MSMg01no095_a01.g1 PHD_FILE: MSMg01no095_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:53 2005
(587 letters)
>mm_chr17_73591533_73592517
Length = 985
Score = 986 bits (510), Expect = 0.0
Identities = 550/580 (94%), Gaps = 28/580 (4%)
Strand = Plus / Minus
Query: 1 cttataccaacatagggtctgtgtgtgtggcgtggtcaccattacaacacgagtggaagg 60
||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct: 571 cttataccaacatagggtc--tgcgtgtggcgtggtcaccattagaacacgagtggaagg 514
Query: 61 cgctgcttccttctcgggtttgttctgtgggcgtgcagaggcaggattttagggagagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 cgctgcttccttctcgggtttgttctgtgggcgtgcagaggcaggattttagggagagtc 454
Query: 121 ttaagtgagaagctctcgcagatagatatgtttctacttcattttcagtctctcccgcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ttaagtgagaagctctcgcagatagatatgtttctacttcattttcagtctctcccgcca 394
Query: 181 tgttgcttgactaaagtttaggattccctgggtttgtttcatcaaagacacacaatgtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tgttgcttgactaaagtttaggattccctgggtttgtttcatcaaagacacacaatgtgg 334
Query: 241 gaactcatcacccagcctctatatcggttcatattttagggtgaaatggttcacattata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gaactcatcacccagcctctatatcggttcatattttagggtgaaatggttcacattata 274
Query: 301 aataacccacaactactatatgtaaaatctcttccaatgggatcaactagccaactagtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aataacccacaactactatatgtaaaatctcttccaatgggatcaactagccaactagtg 214
Query: 361 ctgcgagcacttccctcattagctcacctgcacagggagcagggaaagagtctgctggag 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ctgcgagcacttc-------agctcacctgcacagggagcagggaaagagtctgctggag 161
Query: 421 cac-------------------ggctgagctgctgagccctggctgaaggtgtggcaggg 461
||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 160 cacggctgagctgctgagccctggctgagctgctgagccctggctgaaggtgtggcaggg 101
Query: 462 gcattccttaggctgacaaccatcaaggccacatctgcttaggcctgatgctcaagtatt 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 gcattccttaggctgacaaccatcaaggccacatctgcttaggcctgatgctcaagtatt 41
Query: 522 gacttaaagcagttccaagctcaaaagcattaggtgtata 561
||||||||||||||||||||||||||||||||||||||||
Sbjct: 40 gacttaaagcagttccaagctcaaaagcattaggtgtata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 985
Length adjustment: 10
Effective length of query: 577
Effective length of database: 975
Effective search space: 562575
Effective search space used: 562575
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
