BAC Information

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BAC

Clone NameMSMg01-095I24
Chromosome17 (Build37)
Map Location 36,910,077 - 36,910,393
singlet/doubletsinglet
Overlap geneH2-M10.5
Upstream geneIer3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915
Downstream geneH2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095I24.T7 (MSMg01no095_i24.b1)MSMg01-095I24.TJ (MSMg01no095_i24.g1)
ACCAG312446AG312447
length711717
length of high quality
(start - end)
321 (43 - 363)286 (72 - 357)
definitionCHROMAT_FILE: MSMg01no095_i24.b1 PHD_FILE: MSMg01no095_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:37 2005CHROMAT_FILE: MSMg01no095_i24.g1 PHD_FILE: MSMg01no095_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:37 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCGCCTGTCTACCTGTGACAATTCCGCAACGCTTGCTGTCTCACTGGCCC
AATATGTCATTGGCACCTGCTCCATCCATGCAACCCGAGGTAGCAAAACT
GCAATTGGTTCTTTGCTGTCATATCTCTGATACTCTATAGAGTCTACATA
GCCAATGTGGATGAACCGGGAATTAACCATGCCAGGCTCCAAAATCACAG
CGTTGAAAGTCTGCAGCCAGTGTGAGCCTGTGGGTGATGCACATTGAAAT
GCTGACTCTTTATCGTGGACTCAGAGCAGGTTGGTAGGGAACAGAGCAGG
GGTGGTGGTATGCTTATGGACCTGACGTGCAGGAGAGGGTCAGGGGTGAT
CCAGCTAGGGGATCAGCGAGGGTCTGGTTAGGCAAGGGAGAAGATGCAGA
AATGAGGATTCCAGGTGCTATTTCCTGCTCCCCAAAAGGCCAATTCCCTC
CAGTCCCACACCCACCTGCACAATACTGGTTCAGGTCCATGGCCACCAAG
AGGAGGAGGAGTGTGCAGCATCCAGGGTTCCTCATCCTCTCTGATGAGTG
GAGTCTCAATCAGGACTAGTCTGTCTTTACTTTATAACCTGATGTGCCTG
ATGCTGATTGGCTTCTCTTAAATTTCCCAAAGGCCGTGACGTAGACCTGA
AGCGGTGGGTC
AATGATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTGCTTAACTGTGTACACCATTTTTAAT
TGGGTCATTTGTGTTGGTGTCTAAATTCTTGAATTTGTAGAAATTTTGGA
TATTAATACTTTGTCCAATGTAGGGATGGTGAAGATCCTTTCCCAATCTA
TAGGCTATTGTTGTGTCCTATTGGCAGTGTCTTTTACCTTACAGGACCTT
TTCAGTTTCAAGAAGTCCCACTAATTGATTGTTGATTGTATGGATTGTAT
GGATCTCTTTGCATTTTTCTACAGGCAGACATCCATTTAGTACTGCACCA
TTTGGTGAAGATTCTTTCTTTCCTACATGGCATAATTTTGAGTATTTTAG
TAAAAATCAGGTGTCCATAATTGTATGTGTTTATTTCAGGGTCGTTGATT
CAATTCCATTGATCAACATGACTGTTTCTATGCCAATACCATGAAGTTTT
GATTACTCTTGCTCTGCAGTACAGCTTGAGGTCAGGGATGGTGATATTCC
CAGAAGTTCTTTTATTGCTCTGCATTATTTTAGCAATTCTGGGTTTTTTA
TTATGCTATATAAAGTTGAGAATTGTTCTTTCAATGCCTGGAAAGAATTA
CACTGTAATTTTTTGATGAGAATTGCATTGGATCTGTAGATTTCCTTCTG
TAAGATGGCCATTTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_i24.b1 MSMg01no095_i24.b1 CHROMAT_FILE:
MSMg01no095_i24.b1 PHD_FILE: MSMg01no095_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:37 2005
         (321 letters)



>mm_chr17_36909873_36910593
          Length = 721

 Score =  574 bits (297), Expect = e-168
 Identities = 312/317 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcgcctgtctacctgtgacaattccgcaacgcttgctgtctcactggcccaatatg 64
           ||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 521 gaattcgtctgtctagctgtgacaattccgcaacgcttgctgtctcactggtccaatatg 462

                                                                       
Query: 65  tcattggcacctgctccatccatgcaacccgaggtagcaaaactgcaattggttctttgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tcattggcacctgctccatccatgcaacccgaggtagcaaaactgcaattggttctttgc 402

                                                                       
Query: 125 tgtcatatctctgatactctatagagtctacatagccaatgtggatgaaccgggaattaa 184
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 401 tgtcatatctctgatactctatagagtctacatagccaatgtggacgaaccgggaattaa 342

                                                                       
Query: 185 ccatgccaggctccaaaatcacagcgttgaaagtctgcagccagtgtgagcctgtgggtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ccatgccaggctccaaaatcacagcgttgaaagtctgcagccagtgtgagcctgtgggtg 282

                                                                       
Query: 245 atgcacattgaaatgctgactctttatcgtggactcagagcaggttggtagggaacagag 304
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 281 atgcacattgaaatgctgactctttagcgtggactcagagcaggttggtagggaacagag 222

                            
Query: 305 caggggtggtggtatgc 321
           |||||||||||||||||
Sbjct: 221 caggggtggtggtatgc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)