BAC Information

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BAC

Clone NameMSMg01-097C09
Chromosome17 (Build37)
Map Location 33,140,901 - 33,141,410
singlet/doubletsinglet
Overlap geneC920016K16Rik
Upstream geneHsf2bp, Rrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l, Wiz, A430107D22Rik, Pglyrp2, 4732474A20Rik, EG208285, Cyp4f16, LOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472
Downstream gene1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097C09.T7 (MSMg01no097_c09.b1)MSMg01-097C09.TJ (MSMg01no097_c09.g1)
ACCAG313654AG313655
length900695
length of high quality
(start - end)
---510 (52 - 561)
definitionCHROMAT_FILE: MSMg01no097_c09.b1 PHD_FILE: MSMg01no097_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:47 2005CHROMAT_FILE: MSMg01no097_c09.g1 PHD_FILE: MSMg01no097_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGAACGGACACACCGAGGGCACCACACCAACACCGCGCGCGCGCGCCGC
CACAAGCTTCCCCGACGCGCGCGATTTTGTGCGAATAGTACGTGCTTTAT
ATTATATCATTAACGTCATTTATGCTCCTTACCGTCCCCATTCCCGACAA
AAATGGATATATGTGGGGGAACGCGAAGAATAAAAAACGCCACCATAGTT
GGGTGGTCGTACACGACAAAACCGCGACCGCTCTTTTTTTTCTTCTGTTT
TCGCTTAACCGGCTTTTCCCATAGCTACCGGTCAAAGTGAGCCCCCGGGG
CGGTAACAATAGATGGGGGTCTATGGCCGCTTAAACACCATAGTAAATGG
GCCGCAAACTCGTTCGCGAACCCACACAACGGTACAGACGTATGAAAACT
AGGGGGGGGTAACAAGAACAAGCACAGAAAAGAAATATGGCGAAAACTGT
AGATAACTTTCACGGAACCACAGAAGTGGTAAATTAATTATAAACCGAAA
CCGGCCACACGAGCAAAGGGACACACACCACAATTATTATAGGCCGTATA
ACGCACGTAAGCAAAACACTGGGGTAAAAACAAATAATCGGCGGGGGGAG
AAAGAGGTGGTGGGAAACAAACATAGGGTGGTGCACCGGTGAAATCATAA
AAAATGGGGGGGGCGAAAAAAAAAGGCGGGGGGGGGGCGGGGCAAATAAA
GAAAAAAAATGGGGTGCAGGGGTCTGCAACCCCCTGTACTGGGTAACTAG
TGTGGGCGAGAAAAAACAACCGGGGGCACCTGGTGGGGGGCACAAAAGAA
CGAGCCGTCACCACGGAGGAGTGTTCCCCAACCAGGGGGGGCGGTGGTGG
CAGACGCCCCGGGAAAGTACAGGTGCAATAAAACAGTNTTCCCGCCACCC

GGCGGCGCCTGGTTCCGACATTTAGGGACTATAGAAGTTCCCCGAAATTC
CACTGGAGAAAAACCTTACATATGTAATTATTGTGGGAAAGCATTTACGC
TCTCCACATGCCTTCACAAACATGAACGAGCTCATGCTGAAAAGAAACCC
AGTGGGTAGAACTGAAGCCCATATAGATCTTTGATCAACTGTCAGGAAAA
GTGTATGCAGGGTCAGTCAGATGGCTCAGGGATAAAAGCACTTGCCCTAA
GCTTGGTAGCCATAGTTGGAACCTCAGAACCCATGTGAAGAGAGAGAACT
GAATTTCCAAGGTTTGCCTCTGACTTGTACATATGTGCTGTCATTTGCAT
GCATACCCTCACATAGATGTATAAAGAAATAGGATAATTTAAAATACCTT
TTTAAATTTTGTTTTGTTTTGAGACAGGGTTTCACTGTGCAGCCCCTTGG
TTGTCCTGCAACTCACTCTGCAGACCAGGCTGGCCTTAAACTCAGAGGTC
CCCCTGCCTCTGCCTTCCGAGTGTTGAGATTAAAAGTGTGCACGTCTCTG
CTGCCTAGCTTTAAGATCATTTTAATGTTGCTTTTGATTTGTAGCTATTT
GTCAGTATGTGTGGCTATGTGCCTGCGACGCCTGTAGCACACTGCAGTCC
GAGGCATCTTTTTCCCCACGAGCTGCGATTACGGGATCCGGTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_c09.g1 MSMg01no097_c09.g1 CHROMAT_FILE:
MSMg01no097_c09.g1 PHD_FILE: MSMg01no097_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:47 2005
         (510 letters)



>mm_chr17_33140701_33141610
          Length = 910

 Score =  963 bits (498), Expect = 0.0
 Identities = 507/510 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actggagaaaaaccttacatatgtaattattgtgggaaagcatttacgctctccacatgc 60
           |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 201 actggagaaaaaccttacatatgtaattattgtgggaaagcatttagggtctccacatgc 260

                                                                       
Query: 61  cttcacaaacatgaacgagctcatgctgaaaagaaacccagtgggtagaactgaagccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcacaaacatgaacgagctcatgctgaaaagaaacccagtgggtagaactgaagccca 320

                                                                       
Query: 121 tatagatctttgatcaactgtcaggaaaagtgtatgcagggtcagtcagatggctcaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatagatctttgatcaactgtcaggaaaagtgtatgcagggtcagtcagatggctcaggg 380

                                                                       
Query: 181 ataaaagcacttgccctaagcttggtagccatagttggaacctcagaacccatgtgaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaaagcacttgccctaagcttggtagccatagttggaacctcagaacccatgtgaaga 440

                                                                       
Query: 241 gagagaactgaatttccaaggtttgcctctgacttgtacatatgtgctgtcatttgcatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagagaactgaatttccaaggtttgcctctgacttgtacatatgtgctgtcatttgcatg 500

                                                                       
Query: 301 cataccctcacatagatgtataaagaaataggataatttaaaatacctttttaaattttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cataccctcacatagatgtataaagaaataggataatttaaaatacctttttaaattttg 560

                                                                       
Query: 361 ttttgttttgagacagggtttcactgtgcagccccttggttgtcctgcaactcactctgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttgttttgagacagggtttcactgtgcagccccttggttgtcctgcaactcactctgc 620

                                                                       
Query: 421 agaccaggctggccttaaactcagaggtccccctgcctctgccttccgagtgttgagatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaccaggctggccttaaactcagaggtccccctgcctctgccttccgagtgttgagatt 680

                                         
Query: 481 aaaagtgtgcacgtctctgctgcctagctt 510
           ||||||||||||||| ||||||||||||||
Sbjct: 681 aaaagtgtgcacgtccctgctgcctagctt 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)