MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-097E10
Chromosome	17 (Build37)
Map Location	48,891,873 - 48,892,120
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419, Trem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1, Nfya, AI314976, Apobec2, Bzrpl1, Unc5cl
Downstream gene	Lrfn2, 1700008K24Rik, LOC672972, Mocs1, Daam2, Kif6
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100043405 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043405
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Tcfeb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21425 MGI:103270
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mdfi (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17240 MGI:107687
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Foxp4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74123 MGI:1921373
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC383250 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:383250
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	1700122O11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76651 MGI:1923901
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	1700067P10Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68224 MGI:1915474
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9830107B12Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:328829 MGI:3608415
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A530064D06Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:328830 MGI:2443476
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043419 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043419
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Trem1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:58217 MGI:1930005
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Trem3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:58218 MGI:1930003
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Treml4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:224840 MGI:1923239
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Treml2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:328833 MGI:2147038
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	B430306N03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320148 MGI:2443478
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Trem2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:83433 MGI:1913150
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Treml1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71326 MGI:1918576
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nfya (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18044 MGI:97316
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	AI314976 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:106821 MGI:2146818
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Apobec2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11811 MGI:1343178
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Bzrpl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70026 MGI:1917276
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Unc5cl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76589 MGI:1923839
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lrfn2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70530 MGI:1917780
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700008K24Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69311 MGI:1916561
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 26 ESTs

name	LOC672972 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:672972
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Mocs1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56738 MGI:1928904
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Daam2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76441 MGI:1923691
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kif6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319991 MGI:1098238
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs, 4 Proteins

name	Tcfeb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40538818 GeneID:21425 MGI:103270
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transcription factor EB transcript_id : NM_011549.2

name	Mdfi (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754665 GeneID:17240 MGI:107687
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : MyoD family inhibitor transcript_id : NM_010783.1

name	Foxp4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21630274 GeneID:74123 MGI:1921373
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : forkhead box P4 transcript_id : NM_028767.1

name	1700122O11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268728 GeneID:76651 MGI:1923901
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA 1700122O11 gene transcript_id : XM_001480119.1

name	1700067P10Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126722639 GeneID:68224 MGI:1915474
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700067P10 gene transcript_id : NM_026625.2

name	9830107B12Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130515 GeneID:328829 MGI:3608415
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 9830107B12 gene transcript_id : NM_177824.3

name	A530064D06Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802702 GeneID:328830 MGI:2443476
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A530064D06 gene transcript_id : NM_178796.4

name	Trem1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142362336 GeneID:58217 MGI:1930005
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : triggering receptor expressed on myeloid cells 1 transcript_id : NM_021406.3

name	Trem3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142378895 GeneID:58218 MGI:1930003
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : triggering receptor expressed on myeloid cells 3 transcript_id : NM_021407.2

name	Treml4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27369889 GeneID:224840 MGI:1923239
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : triggering receptor expressed on myeloid cells-like 4 transcript_id : NM_172623.1

name	Treml4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:76677892 GeneID:224840 MGI:1923239
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : triggering receptor expressed on myeloid cells-like 4 transcript_id : NM_001033922.1

name	Treml2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133908635 GeneID:328833 MGI:2147038
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : triggering receptor expressed on myeloid cells-like 2 transcript_id : NM_001033405.2

name	B430306N03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802088 GeneID:320148 MGI:2443478
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA B430306N03 gene transcript_id : NM_177083.3

name	Trem2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981415 GeneID:83433 MGI:1913150
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : triggering receptor expressed on myeloid cells 2 transcript_id : NM_031254.2

name	Treml1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58037246 GeneID:71326 MGI:1918576
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : triggering receptor expressed on myeloid cells-like 1 transcript_id : NM_027763.1

name	Nfya (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754847 GeneID:18044 MGI:97316
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear transcription factor-Y alpha transcript_id : NM_010913.1

name	AI314976 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142382757 GeneID:106821 MGI:2146818
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence AI314976 transcript_id : NM_207219.3

name	Apobec2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803136 GeneID:11811 MGI:1343178
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : apolipoprotein B editing complex 2 transcript_id : NM_009694.2

name	Bzrpl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142368798 GeneID:70026 MGI:1917276
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : benzodiazapine receptor, peripheral-like 1 transcript_id : NM_027292.2

name	Unc5cl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:65301485 GeneID:76589 MGI:1923839
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : unc-5 homolog C (C. elegans)-like transcript_id : NM_152823.3

name	Lrfn2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142388558 GeneID:70530 MGI:1917780
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leucine rich repeat and fibronectin type III domain containing 2 transcript_id : NM_027452.2

name	1700008K24Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268866 GeneID:69311 MGI:1916561
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 26 ESTs product : RIKEN cDNA 1700008K24 gene transcript_id : XM_001481104.1

name	Mocs1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:30524915 GeneID:56738 MGI:1928904
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : molybdenum cofactor synthesis 1 transcript_id : NM_020042.1

name	Daam2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116089317 GeneID:76441 MGI:1923691
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dishevelled associated activator of morphogenesis 2 transcript_id : NM_001008231.2

name	Kif6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268868 GeneID:319991 MGI:1098238
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs, 4 Proteins product : kinesin family member 6 transcript_id : XM_001001635.2

name	Tcfeb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40538819 CCDS:CCDS28856.1 GeneID:21425 MGI:103270
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0003700 - transcription factor activity [Evidence IDA]; GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0045893 - positive regulation of transcription, DNA-dependent [Evidence IDA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation product : transcription factor EB protein_id : NP_035679.2

name	Mdfi (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754666 GeneID:17240 MGI:107687
definition	GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA] codon_start : 1 product : MyoD family inhibitor protein_id : NP_034913.1

name	Foxp4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21630275 GeneID:74123 MGI:1921373
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IC] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0046982 - protein heterodimerization activity [Evidence IPI]; GO:0042803 - protein homodimerization activity [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0016564 - transcriptional repressor activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0048617 - embryonic foregut morphogenesis [Evidence IMP]; GO:0007507 - heart development [Evidence IMP]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : fork head-related protein like A product : winged-helix repressor FOXP4 protein_id : NP_083043.1

name	1700122O11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149268729 GeneID:76651 MGI:1923901
definition	codon_start : 1 product : hypothetical protein LOC76651 protein_id : XP_001480169.1

name	1700067P10Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126722640 CCDS:CCDS28857.1 GeneID:68224 MGI:1915474
definition	codon_start : 1 product : hypothetical protein LOC68224 protein_id : NP_080901.2

name	9830107B12Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244382 GeneID:328829 MGI:3608415
definition	codon_start : 1 product : hypothetical protein LOC328829 protein_id : NP_808492.1

name	A530064D06Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31559837 CCDS:CCDS28859.1 GeneID:328830 MGI:2443476
definition	codon_start : 1 product : hypothetical protein LOC328830 protein_id : NP_848911.2

name	Trem1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946760 CCDS:CCDS28860.1 GeneID:58217 MGI:1930005
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 note : triggering receptor expressed in monocytes 1 product : triggering receptor expressed on myeloid cells 1 protein_id : NP_067381.1

name	Trem3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946762 CCDS:CCDS28861.1 GeneID:58218 MGI:1930003
definition	GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 note : triggering receptor expressed on monocytes 3 product : triggering receptor expressed on myeloid cells 3 protein_id : NP_067382.1

name	Treml4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369890 CCDS:CCDS28862.1 GeneID:224840 MGI:1923239
definition	GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 2 is encoded by transcript variant 2; IG-like domain containing protein IDCP1c product : triggering receptor expressed on myeloid cells-like 4 isoform 2 protein_id : NP_766211.1

name	Treml4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:76677893 GeneID:224840 MGI:1923239
definition	GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; IG-like domain containing protein IDCP1c product : triggering receptor expressed on myeloid cells-like 4 isoform 1 protein_id : NP_001029094.1

name	Treml2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:133908636 GeneID:328833 MGI:2147038
definition	codon_start : 1 note : trem-like transcript 2 product : triggering receptor expressed on myeloid cells-like 2 protein_id : NP_001028577.2

name	B430306N03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28893001 CCDS:CCDS28864.1 GeneID:320148 MGI:2443478
definition	codon_start : 1 product : hypothetical protein LOC320148 protein_id : NP_796057.1

name	Trem2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13994125 CCDS:CCDS28865.1 GeneID:83433 MGI:1913150
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA]; GO:0004888 - transmembrane receptor activity [Evidence ISS] codon_start : 1 note : triggering receptor expressed on myeloid cells 2c; triggering receptor expressed on myeloid cells 2a; triggering receptor expressed on myeloid cells 2b product : triggering receptor expressed on myeloid cells 2 protein_id : NP_112544.1

name	Treml1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037247 CCDS:CCDS28866.1 GeneID:71326 MGI:1918576
definition	GO_component : GO:0009986 - cell surface [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence TAS] GO_process : GO:0009968 - negative regulation of signal transduction [Evidence TAS] codon_start : 1 product : triggering receptor expressed on myeloid cells-like 1 protein_id : NP_082039.1

name	Nfya (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754848 CCDS:CCDS28867.1 GeneID:18044 MGI:97316
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence ISS] [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence IDA]; GO:0016563 - transcriptional activator activity [Evidence IDA] GO_process : GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045893 - positive regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : nuclear transcription factor-Y alpha protein_id : NP_035043.1

name	AI314976 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625732 GeneID:106821 MGI:2146818
definition	codon_start : 1 product : hypothetical protein LOC106821 protein_id : NP_997102.2

name	Apobec2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753098 CCDS:CCDS28868.1 GeneID:11811 MGI:1343178
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016814 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003969 - RNA editase activity [Evidence IMP]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006381 - mRNA editing [Evidence IMP]; GO:0006397 - mRNA processing [Evidence IEA] codon_start : 1 product : apolipoprotein B editing complex 2 protein_id : NP_033824.1

name	Bzrpl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27229096 CCDS:CCDS28869.1 GeneID:70026 MGI:1917276
definition	GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 product : benzodiazapine receptor, peripheral-like 1 protein_id : NP_081568.1

name	Unc5cl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:65301486 CCDS:CCDS28870.1 GeneID:76589 MGI:1923839
definition	GO_function : GO:0005515 - protein binding [Evidence IEA] codon_start : 1 exception : mismatches in translation note : ZU5 and death domain-containing inhibitor of NF-kB product : unc-5 homolog C (C. elegans)-like protein_id : NP_690036.3

name	Lrfn2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037213 CCDS:CCDS28871.1 GeneID:70530 MGI:1917780
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation product : leucine rich repeat and fibronectin type III domain containing 2 protein_id : NP_081728.1

name	1700008K24Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149268867 GeneID:69311 MGI:1916561
definition	codon_start : 1 product : hypothetical protein LOC69311 protein_id : XP_001481154.1

name	Mocs1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30524916 GeneID:56738 MGI:1928904
definition	codon_start : 1 note : protein B is encoded by transcript variant 1; molybdenum cofactor synthesis-step 1 proteins A and B product : molybdenum cofactor synthesis 1 protein B protein_id : NP_064426.1

name	Daam2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116089318 GeneID:76441 MGI:1923691
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0005488 - binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0017048 - Rho GTPase binding [Evidence IEA] GO_process : GO:0030036 - actin cytoskeleton organization and biogenesis [Evidence IEA]; GO:0008150 - biological_process [Evidence ND]; GO:0016043 - cell organization and biogenesis [Evidence IEA] codon_start : 1 product : dishevelled associated activator of morphogenesis 2 protein_id : NP_001008232.2

name	Kif6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149268869 GeneID:319991 MGI:1098238
definition	codon_start : 1 note : overriding stop codons product : kinesin family member 6 protein_id : XP_001001635.2 transl_except : (pos:50042863..50042865,aa:OTHER)

name	LOC100043405 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043405
definition	number : 2 pseudo : _no_value

name	LOC100043405 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043405
definition	number : 1 pseudo : _no_value

name	LOC383250 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:383250
definition	number : 1 pseudo : _no_value

name	LOC100043419 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043419
definition	number : 1 pseudo : _no_value

name	LOC100043419 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043419
definition	number : 2 pseudo : _no_value

name	LOC672972 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:672972
definition	number : 4 pseudo : _no_value

name	LOC672972 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:672972
definition	number : 3 pseudo : _no_value

name	LOC672972 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:672972
definition	number : 2 pseudo : _no_value

name	LOC672972 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:672972
definition	number : 1 pseudo : _no_value

clone name	MSMg01-520G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-235O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-407M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497O14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-445O05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421J08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-052G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-086B16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-145J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-350B03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279A11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-184O03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-098K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101E19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-393J04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-401A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-541P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-120F10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-049B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-313K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453K15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-098P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-097E10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-059N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507D16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386H23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-457A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-447H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389D23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145A04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-445I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-214B03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521G03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-205I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-393G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-186J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372A24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-159L11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-174D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-054N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-500N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-410O11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-094L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-091M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-465J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-235H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-421F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-395I16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-449L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-053N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-135O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-050D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-197A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-155M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273G22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-203G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296E15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262M12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-011P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151O11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230J18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-281J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016C20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-296A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245L17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-254G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041H01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-005F05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-085M24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-282N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011K19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-015I18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168G04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-217M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097D04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-259C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272E06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-204G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150G08
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-097E10.T7 (MSMg01no097_e10.b1)	MSMg01-097E10.TJ (MSMg01no097_e10.g1)
ACC	AG313748	AG313749
length	1,345	781
length of high quality (start - end)	---	248 (120 - 367)
definition	CHROMAT_FILE: MSMg01no097_e10.b1 PHD_FILE: MSMg01no097_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:57 2005	CHROMAT_FILE: MSMg01no097_e10.g1 PHD_FILE: MSMg01no097_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:57 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	ACCAAAACNACAACAACACAACCAANNAAACAACCACACACAAACCAAAC AAACAACCCACCAACCCACCCCAACACACATACATTCACCACCAACCACG CTCCGATCTTTTGTGACCCACATTAAGTTTCGTGGACCGATTCTTTACTC TAACCAGACTGCCACGCGACATAAAAGTGCGGGAGANTGGCGGGGCGGGC GTGTAGGAGGGTAATGGATTTGGGCGTGAATCCGCTCGGCGCCGCCCCCG GAGGTAAGATAGAGAAATGCGCCGCGCGATTGTCTTCGTGTTAGTGTCAT ATAGAAGATATCGACACAACGGTGGGCACCACCGCGTTTTGATGGTGTAT AATGATATATTGCGTGTGCGAACGGGAGATTATGAGCATGTAACGTTGAC TCTGTGCGCANTATAGGCGGCGCACGTGGGATAGCGAAAATACCTTGTGG TGGTGGGAGGCATATGTGGGCCGCTACCGGGTTCGGGGTGGTGTGGGATG GGAGCAACGAACAGCGCCGTACGTTCGCCTTCCGTACCCCTATCGCCGTT CAAATACGTTAATGTTAACCGTCGGACGGAGAGGGTCGAAAACATAGCCG CCGGGCGGCGCGCAGCCTCCCCAGTGGCAGTGCCCGCTCGAGCTCGGTGC GCTTGTGTGTTCGAGCTGCGCCTCTCGACCGGGGAAGCTCCGCGGAGTCG TGCTTGGCACGCGTCCGAACCGACAGGGGCGTCGACGTGAGGATATAGTG GAACGAGCATTCGGTCGCGTAGGCTAAGTTGTATACGGNCTGTTCTTGCG ACGCCTAGCTGATGCGCCGATCAGCCCATGAGCTATCTCACACCACTACA TGACCCATCGTCCGGGTGGCAGGGACATCTTGCGCTGCTGTGGGTGGATA TCCCACCACGCGGCTCGAGGGGAGGTGGCCGACGCGGGATAGGAGAGTAA CAGACAGACGGAGGGGGTGGCGGCGATTATATATAGATAGCGGCGGGCGG CGTGGCGCGGCGCGCGGCANGTTATAACTATGATCATCTGAATCACCAGC GGTGGGCTACTGGGAACTCTAACGGACCCACCTGCCCTAGTGATACGTCT CACCACGTATGTGCACGCACGCCCGCGAAACTAATAACACACACCGAAGC TGCTCCCAGAGGGAGGATGTGATAACGATCAGTCATAGAATCAGTATAGC TGATCCTCCACGCGTAGTATTATATTATCACGCCGTTACACACTACCGCG AGGCGCGNGGATACGATGCANACGAGATANTGCGCAGAGAANGAATGCGG ATAGAGCAGGATACAACACAGCCGGGAGGAGAGCAGGACAGGGCG	NTTTCCCTATTTTTTTTCCACCCCCCTCCCCCCCCCTCCCCCCACCCNNC CCCGATGCAGGAGTAGCCTGGCGGCGCCTGGCCTCAACATTAGGTGACCT ATAGAAGTTTCCAGGAATCACCTCTAAACCCTGGAGCCTGCCAAAGAAGA ACTGCTGAACTTTCTAAACGACCCAGAACTGCTGAGAGCAAGAATTATGC CTTCCCCCATCTCTTCCCAATCTTTGAACAAAATTAAGATCGTTTCCAAA AATACTCACTGAATACACGCACAGAGGTGAATGATCGAGGCCTTTATACA GAGGTTTGGGGGGCTCTGTCATTGGAGATCATCTGTTTCCTCTTTCTTGT TGGAGGGCTCCACAGTATTTCTTTGAGGAGGGTTTCACGGGATATCTCAC CTACTGGTGTCGGATCCTTGACTGCACTGCGCCTTCGATATTCATCTGCT AAATTACCGAGTCAATCGACTCTGCTCTTCATCTAACATGCGACGAGTAT GCATGCTCGCCCGTACCACACCGCCATATCCTGACTGACGATAGGTACCC AGACCGATAGAAAGACCGCCACGATCTATTCACCACCTAACGACCCAACG AAAGAGCTCATCAGGCCAGTCACAAATCGACACCCCCTTTCGCCCCCCCT TTTCCCACCAATTTAGTACCCCCCGCACAATAGCTAACCTTTACTTTGCC CCCCCCCCCCTTATCTCTCTTCTCTCTTCCTGTTATCACCTTTTTTTTCT ACGCCTTCCTTTTTAAACCCTTGTGTTTCTG
quality values	Open. Hide. 6 6 6 6 8 7 6 3 0 3 6 6 8 6 7 8 8 8 6 6 7 10 6 6 3 0 0 3 12 12 12 8 8 8 8 8 8 8 6 8 6 6 6 6 10 11 11 10 8 6 6 6 6 8 8 10 9 11 9 10 11 10 7 6 6 8 8 11 21 6 6 6 6 6 6 6 6 6 8 8 8 8 8 10 8 8 8 8 8 8 6 8 6 6 8 6 6 8 8 8 8 11 10 8 8 8 6 6 8 15 15 11 9 8 10 10 8 8 8 8 8 6 6 6 6 8 6 9 10 10 8 6 6 8 6 6 6 6 6 6 6 8 6 7 8 8 8 8 11 11 6 6 6 6 8 8 6 6 6 6 9 8 8 8 6 6 8 8 8 8 8 8 8 8 8 11 9 8 10 13 10 10 10 11 11 3 0 3 11 12 8 10 7 7 6 6 8 8 10 10 8 8 8 8 8 10 8 6 6 8 8 7 7 7 8 8 8 6 8 8 8 8 15 13 10 9 9 11 11 11 8 8 8 8 8 8 8 8 8 8 8 9 10 10 10 10 8 8 8 8 8 8 9 8 8 8 8 12 10 10 8 7 7 7 6 8 6 9 6 8 6 6 8 8 8 8 8 8 8 11 11 10 9 9 9 10 9 6 8 6 6 8 8 9 9 6 8 6 7 8 10 6 6 6 6 8 6 6 8 8 8 8 9 8 8 8 8 6 6 6 6 6 6 6 8 6 6 6 6 11 13 10 8 6 6 10 15 12 10 6 6 8 8 11 11 8 8 8 8 9 9 9 8 8 8 8 8 8 8 8 8 8 6 6 8 8 8 10 11 8 8 8 8 10 10 8 8 8 8 8 8 8 8 11 11 13 10 9 9 9 8 8 6 6 8 6 6 6 6 8 8 9 9 9 9 11 13 10 10 3 0 3 8 8 8 8 8 7 6 10 10 10 8 8 8 11 9 6 7 6 6 8 6 6 7 6 8 8 8 8 9 8 8 8 8 8 8 9 8 8 6 6 8 6 6 12 10 10 9 10 9 10 10 11 8 8 8 8 8 8 9 9 7 8 8 8 8 8 8 8 8 8 8 10 8 8 8 6 6 8 6 6 8 6 8 8 8 8 10 10 10 16 18 8 8 8 6 6 6 8 8 12 13 10 7 6 9 9 9 8 8 6 6 8 6 7 10 10 10 8 8 8 8 8 8 6 6 6 6 8 8 8 8 8 8 8 10 10 8 8 9 10 8 8 8 8 6 6 6 8 8 8 8 8 8 10 11 9 8 10 8 8 8 8 8 8 8 8 6 6 6 6 8 8 8 8 6 7 8 8 10 10 7 6 6 6 6 8 8 8 8 8 8 8 10 12 15 16 10 8 8 6 6 6 6 10 10 10 10 8 8 10 8 10 8 8 6 6 6 6 8 8 8 8 10 10 9 8 8 8 8 8 8 8 8 10 8 13 11 11 11 11 9 10 10 9 9 9 11 11 16 10 8 8 8 8 10 10 10 10 9 10 11 6 6 6 6 6 8 8 9 8 8 6 6 8 6 6 6 8 13 9 8 8 8 8 8 8 8 8 6 7 6 8 10 8 6 6 11 11 9 9 9 10 10 10 10 12 12 10 6 6 8 8 6 6 10 8 9 9 9 10 10 10 10 9 8 8 6 6 8 8 6 6 6 6 6 6 6 6 8 8 8 8 6 6 6 6 8 8 9 9 10 9 9 10 6 8 7 7 8 8 8 8 8 8 6 6 8 6 6 6 6 8 8 8 8 3 0 3 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 6 6 7 8 6 8 8 8 8 8 10 15 19 17 10 10 8 8 8 8 9 9 9 10 15 12 12 12 12 13 10 10 10 10 8 8 8 8 8 8 11 10 8 10 8 8 6 6 6 6 6 6 6 6 6 6 6 8 8 8 8 8 6 6 6 8 6 6 6 6 8 6 8 8 8 8 8 8 6 8 6 6 8 8 8 7 8 8 8 10 10 10 10 10 11 9 6 6 6 6 6 8 6 6 6 8 8 11 6 6 6 6 6 8 6 6 6 6 6 10 10 15 8 8 8 8 6 6 6 7 11 6 6 6 6 6 6 8 6 6 6 8 10 6 7 7 6 6 6 7 11 16 10 6 6 7 6 10 9 7 8 6 6 6 8 8 8 8 8 8 8 6 7 12 10 10 10 8 8 8 6 10 9 9 9 10 10 8 8 6 8 6 7 7 9 10 10 10 10 8 8 6 6 8 3 0 3 9 9 10 11 10 10 10 8 8 6 6 6 6 6 6 6 6 6 6 6 7 7 8 8 8 8 8 8 6 6 6 6 6 8 8 8 6 6 6 6 6 6 9 9 8 8 6 6 6 6 10 6 7 7 7 7 7 10 6 6 6 6 6 8 8 10 8 8 10 8 8 8 8 8 8 8 8 8 6 6 6 6 6 6 8 8 8 8 8 8 8 10 10 8 8 8 8 8 10 9 6 6 6 7 6 6 8 6 6 6 8 8 10 11 6 6 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 11 11 8 6 6 6 8 8 6 6 6 6 8 10 6 6 6 8 12 9 9 9 10 10 10 9 8 8 8 8 8 8 8 8 8 8 10 8 8 8 8 10 10 11 8 8 6 6 6 6 8 8 8 8 8 8 8 8 8 10 10 8 8 6 6 6 6 8 8 8 8 10 9 8 7 7 6 6 6 8 6 6 6 8 8 8 8 6 6 6 6 6 8 8 10 10 10 8 6 8 6 6 6 6 3 0 3 6 6 8 6 6 7 8 13 9 10 3 0 3 8 8 8 6 6 6 3 0 3 10 10 8 8 11 8 8 8 8 3 0 3 10 8 8 10 10 8 7 6 6 6 6 6 6 6 6 6 6 6 8 7 8 9 8 6 8 6 6 6 6 6 6 8 6 8 8 8 8 10 8 8 8 8 8 8 8 8 9 11 8 10 8 8	Open. Hide. 0 3 7 7 9 9 9 8 8 8 17 22 24 24 12 9 9 9 9 9 9 9 9 17 16 18 16 11 9 8 10 9 12 12 17 8 8 8 19 15 9 12 9 7 9 8 3 0 0 3 6 6 7 7 8 8 10 9 9 9 9 8 8 11 8 8 8 11 14 28 34 22 20 17 17 20 20 32 27 15 9 9 9 9 9 9 8 8 8 8 10 10 18 30 26 22 12 12 14 27 21 50 47 29 23 9 9 9 11 12 8 7 7 7 8 6 10 10 10 13 17 24 39 43 44 53 59 59 59 47 39 39 30 36 39 40 47 47 43 42 36 35 35 39 43 59 59 48 48 43 37 34 42 42 42 47 47 47 39 46 43 41 41 41 34 21 11 8 8 8 8 15 25 27 39 37 35 33 33 36 36 47 39 39 39 39 39 39 39 43 47 34 36 42 42 40 42 42 42 37 48 48 48 57 57 57 59 57 57 68 68 68 68 44 44 28 28 25 40 40 41 43 46 57 46 46 41 39 39 35 37 32 35 32 27 24 25 25 35 42 42 47 48 48 40 44 27 27 27 36 40 50 57 57 57 44 43 43 43 50 43 35 35 32 36 27 27 43 43 29 29 29 32 43 32 32 17 18 16 38 38 30 30 14 14 14 32 28 39 39 42 42 39 42 42 42 28 28 20 28 28 33 28 28 31 42 44 42 35 35 35 42 42 40 36 40 28 28 20 20 20 29 30 28 23 19 21 16 16 20 24 28 33 42 43 48 48 48 57 57 57 48 48 43 59 32 32 28 20 20 15 18 18 20 23 28 30 35 33 37 32 32 31 20 20 11 11 10 10 8 8 8 10 10 18 18 18 32 30 37 30 30 30 30 27 22 12 12 12 11 19 19 17 15 9 9 9 12 10 12 11 12 12 25 25 23 10 10 6 6 8 8 10 11 12 19 26 28 30 31 31 30 24 24 13 12 12 12 21 18 20 20 20 32 31 22 22 15 15 9 9 9 9 25 28 39 37 28 26 18 14 14 13 10 13 9 10 9 10 13 13 24 28 22 17 15 16 19 24 23 23 21 23 13 13 8 8 8 10 14 22 25 19 11 10 10 13 10 13 13 11 11 15 12 12 10 10 13 10 10 11 12 11 11 18 13 12 12 12 13 12 11 11 10 10 10 10 10 10 8 6 6 7 8 8 8 8 8 11 9 14 14 18 21 23 28 16 15 10 10 10 10 10 12 10 12 13 10 10 10 10 10 10 10 10 10 10 11 11 11 11 11 11 10 12 10 8 8 8 8 8 6 6 8 6 6 6 6 8 8 8 8 8 9 8 10 10 9 8 8 8 8 8 8 13 10 9 9 9 9 9 12 11 11 11 12 12 9 9 9 12 10 9 12 9 9 12 8 8 8 10 10 8 8 8 7 8 7 8 8 8 8 8 8 12 15 17 13 8 12 12 12 12 11 13 8 8 8 8 10 10 12 16 15 8 8 8 8 8 8 9 8 8 8 8 8 8 10 10 13 11 8 8 6 6 6 6 8 8 8 8 8 8 8 8 8 8 12 13 19 15 11 10 8 9 8 8 8 8 10 10 19 12 14 11 13 13 9 10 8 8 8 8 8 8 10 11 11 8 8 8 8 8 8 8 8 12 10 10 8 8 8 8 8 8 13 11 11 9 9 9 9 10 14 16 16 16 16 12 10 10 8 8 8 8 8 9 18 18 15 12 12 12 12 8 8 8 8 8 8 10 10 10 10 11 11 12 11 11 11 11

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no097_e10.g1 MSMg01no097_e10.g1 CHROMAT_FILE:
MSMg01no097_e10.g1 PHD_FILE: MSMg01no097_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:57 2005
         (248 letters)



>mm_chr17_48891673_48892320
          Length = 648

 Score =  449 bits (232), Expect = e-131
 Identities = 244/248 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctctaaaccctggagcctgccaaagaagaactgctgaactttctaaacgacccagaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 448 acctctaaaccctggagcctgccaaagaagaactgctgaactttctaaatgacccagaac 389

                                                                       
Query: 61  tgctgagagcaagaattatgccttcccccatctcttcccaatctttgaacaaaattaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 388 tgctgagagcaagaattatgccttcccccatctcttcccaatctttgaacaaaatcaaga 329

                                                                       
Query: 121 tcgtttccaaaaatactcactgaatacacgcacagaggtgaatgatcgaggcctttatac 180
           ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 328 tcgtttccaaaaatagtcactgaatacacgcacagaggtgaatgagcgaggcctttatac 269

                                                                       
Query: 181 agaggtttggggggctctgtcattggagatcatctgtttcctctttcttgttggagggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agaggtttggggggctctgtcattggagatcatctgtttcctctttcttgttggagggct 209

                   
Query: 241 ccacagta 248
           ||||||||
Sbjct: 208 ccacagta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information