Query= MSMg01no098_f02.b1 MSMg01no098_f02.b1 CHROMAT_FILE:
MSMg01no098_f02.b1 PHD_FILE: MSMg01no098_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:23 2005
(658 letters)
>mm_chr17_31418178_31419235
Length = 1058
Score = 804 bits (416), Expect = 0.0
Identities = 435/442 (98%), Gaps = 2/442 (0%)
Strand = Plus / Minus
Query: 5 gaattcctggcttctaaggtccaaaacgctaacattcattctcacatacttgattacatt 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gaattcctggcttgtaaggtccaaaacgctaacattcattctcacatacttgattacatt 383
Query: 65 tccatttcagttcttaacatttaaaatatgttttcactatagaaataagacatgcgcaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tccatttcagttcttaacatttaaaatatgttttcactatagaaataagacatgcgcaat 323
Query: 125 ggaaacatgtggacacttccaaaaatacagacacagtcatgtccccctgatatcttcacg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ggaaacatgtggacacttccaaaaatacagacacagtcatgtccccctgatatcttcacg 263
Query: 185 cccagctttttcctcactagagaagctgctaacgtgtttataatcttttcatcttcggaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cccagctttttcctcactagagaagctgctaacgtgtttataatcttttcatcttcggaa 203
Query: 245 gtaaacaaacaaacaaacaaaaaacccaagccgggtggtggtggtgcacgcctttactct 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 202 gtaaacaaacaaacaaacaaaaaacccaagccgggtggtggtggtgcacgcctttaatct 143
Query: 305 cagcacttgggaggcagaggcaggtggatttctgagttcgaggccaacctggtctacaga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 cagcacttgggaggcagaggcaggtggatttctgagttcgaggccaacctggtctacaga 83
Query: 365 gtgagttccaggacatccagggctgtacagagaaaccctgcctcaaaaaacaaaacaaaa 424
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 82 gtgagttccaggacatccagggctacacagagaaaccctgcctcaaaaaacaaaacaaaa 23
Query: 425 caaaaaacaaaaaa--aaaccc 444
||||||||||||| ||||||
Sbjct: 22 gaaaaaacaaaaaacaaaaccc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no098_f02.g1 MSMg01no098_f02.g1 CHROMAT_FILE:
MSMg01no098_f02.g1 PHD_FILE: MSMg01no098_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:23 2005
(564 letters)
>mm_chr17_31414543_31415505
Length = 963
Score = 1083 bits (560), Expect = 0.0
Identities = 563/564 (99%), Gaps = 1/564 (0%)
Strand = Plus / Plus
Query: 1 tgaccactcaaactcatgctcactgacccgggtcagggtttaacatctcaaaccaattca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaccactcaaactcatgctcactgacccgggtcagggtttaacatctcaaaccaattca 260
Query: 61 ggttacttttgagctttctctcgcaaagaacccacattcattctgctctgtcttctggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggttacttttgagctttctctcgcaaagaacccacattcattctgctctgtcttctggtg 320
Query: 121 cctgtgggcttcctctcaaaggcccagcctgtcatgccacgcatacagacccactcagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgtgggcttcctctcaaaggcccagcctgtcatgccacgcatacagacccactcagac 380
Query: 181 ccacttattcacactgactgtctcttacagataggtccctccagtgccacattctaccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccacttattcacactgactgtctcttacagataggtccctccagtgccacattctaccct 440
Query: 241 gcaaggcccctctgggtcccctcccacccctatactgtcatcccaggctcagaccttcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaaggcccctctgggtcccctcccacccctatactgtcatcccaggctcagaccttcct 500
Query: 301 gctaagctagactttctgtcccggtatctggcctcctacccgtctcacagttttcctctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctaagctagactttctgtcccggtatctggcctcctacccgtctcacagttttcctctg 560
Query: 361 tgcagaaacccaagcacacacaggctccctctatgtcctcaagatcccccctccctgcac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcagaaacccaagcacacacaggctccctctatgtcctcaagatcccccctccctgcac 620
Query: 421 tagctacattgcaaacaaaccaaaccgcccaatcctctagttcctacttctggcttctgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagctacattgcaaacaaaccaaaccgcccaatcctctagttcctacttctggcttctgc 680
Query: 481 ctgctctagcccaccagctccctggaatacctgcttgcccacacttgaaagcacaccaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgctctagcccaccagctccctggaatacctgcttgcccacacttgaaagcacaccaat 740
Query: 541 acactttttttttcctccccaaag 564
|||||||||||| |||||||||||
Sbjct: 741 acactttttttt-cctccccaaag 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 963
Length adjustment: 10
Effective length of query: 554
Effective length of database: 953
Effective search space: 527962
Effective search space used: 527962
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
